Genome assembly | |
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GCF_000002335.3_Tcas5.2_genomic.fna.gz | Download the version being used by iBeetle-Base |
GCA_000002335.3_Tcas5.2_genomic.fna.gz | Direct link to the FASTA file from NCBI (GenBank version, submitted by the iBeetle project) |
GCF_000002335.3_Tcas5.2_genomic.fna.gz | Direct link to the FASTA file from NCBI (RefSeq version, includes the mitochondrium) |
Gene predictions used by iBeetle project | |
OGS3.gff.gz | Gene prediction as GFF file |
OGS3_mRNA.fasta.gz | mRNA as FASTA file |
OGS3_CDS.fasta.gz | Coding sequences as FASTA file |
OGS3_proteins.fasta.gz | Protein sequences as FASTA file |
Data generated by iBeetle project | |
iBB lethality table | Lethality results from the iBeetle screen |
iBB annotation list | List of all annotations in the iBeetle screen |
Genome browsers | |
JBrowse2 | iBeetle genome browser |
NCBI genome browser | |
i5k genome browser | |
Orthology | |
OrthoFinder_orthology.tsv | Orthology prediction for Tcas and Dmel using OrthoFinder |
Eggnog6_orthology.tsv | Orthology prediction for Tcas and Dmel using Eggnog6 |
Community | |
http://www.Tribolium.net | Link to Tribolium labs and protocols. Maintained by Martin Klingler |
Tribolium listserver | Please subscribe if you wish to remain informed (e.g. meetings, jobs etc). Maintained by Gregor Bucher |
Others | |
Deqor | Off target control for RNAi. iBeetle fragments were designed using this algorithm |
TrOn in BioPortal | The Tribolium Ontology about the morphological structures of Tribolium |
GEKU Base | A database of insertional mutants and enhancer trap lines. (Provided by the GEKU consortium) |
BeetleAtlas | A database of Tribolium gene expression |