Resources
Genomic and gene information
Genome assembly
The current genome assembly is Tcas5.2, the accession numbers for NCBI are:
- GCA_000002335.3 The assembly (GenBank version, submitted by the iBeetle project)
- GCA_000002335.3_Tcas5.2_genomic.fna.gz Direct link to the FASTA file from NCBI's FTP server
- GCF_000002335.3 The assembly (RefSeq version, includes the mitochondrium)
- GCF_000002335.3_Tcas5.2_genomic.fna.gz Direct link to the FASTA file from NCBI's FTP server
- Download the genome as FASTA file from iBeetle-Base
Gene predictions from the iBeetle project
- GFF file (generic feature format)
- mRNA as FASTA file
- Coding sequences as FASTA file
- Protein sequences as FASTA file
Links and resources
iBeetle Genome Browser
NCBI genome Browser/Blast
i5k genome Browser
ENSEMBL genome Browser
iBeetle Blast
The iBeetle Blast uses the most recent predicted gene model for a blast against putative proteins.Off target control for RNAi
Online tool
Deqor
to check for off target sites (iBeetle fragments were designed using
this algorithm)
Other resources
TrOn
The Tribolium Ontology about the morphological structures of Tribolium
on iBeetle Base and on NCBO BioPortal
The OBA-service is used to embed the Tribolium anatomical ontology
(TrOn) into the search function of iBeetle-Base.
(Developed by Jürgen Dönitz and Edgar Wingender)
(Developed by Jürgen Dönitz and Edgar Wingender)
A database of insertional mutants and enhancer trap lines.
(Provided by the GEKU consortium)
(Provided by the GEKU consortium)
www.beetleatlas.org
A database of Tribolium gene expression
A database of Tribolium gene expression
Community
www.Tribolium.net
(Maintained by Martin Klingler)
(Maintained by Martin Klingler)
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etc).
(Maintained by Gregor Bucher)
(Maintained by Gregor Bucher)