| Genome assembly | |
|---|---|
| GCF_000002335.3_Tcas5.2_genomic.fna.gz | Download the version being used by iBeetle-Base |
| GCA_000002335.3_Tcas5.2_genomic.fna.gz | Direct link to the FASTA file from NCBI (GenBank version, submitted by the iBeetle project) |
| GCF_000002335.3_Tcas5.2_genomic.fna.gz | Direct link to the FASTA file from NCBI (RefSeq version, includes the mitochondrium) |
| Gene predictions used by iBeetle project | |
| OGS3.gff.gz | Gene prediction as GFF file |
| OGS3_mRNA.fasta.gz | mRNA as FASTA file |
| OGS3_CDS.fasta.gz | Coding sequences as FASTA file |
| OGS3_proteins.fasta.gz | Protein sequences as FASTA file |
| Data generated by iBeetle project | |
| iBB lethality table | Lethality results from the iBeetle screen |
| iBB annotation list | List of all annotations in the iBeetle screen |
| Genome browsers | |
| JBrowse2 | iBeetle genome browser |
| NCBI genome browser | |
| i5k genome browser | |
| Orthology | |
| OrthoFinder_orthology.tsv | Orthology prediction for Tcas and Dmel using OrthoFinder |
| Eggnog6_orthology.tsv | Orthology prediction for Tcas and Dmel using Eggnog6 |
| Community | |
| http://www.Tribolium.net | Link to Tribolium labs and protocols. Maintained by Martin Klingler |
| Tribolium listserver | Please subscribe if you wish to remain informed (e.g. meetings, jobs etc). Maintained by Gregor Bucher |
| Others | |
| Deqor | Off target control for RNAi. iBeetle fragments were designed using this algorithm |
| TrOn in BioPortal | The Tribolium Ontology about the morphological structures of Tribolium |
| GEKU Base | A database of insertional mutants and enhancer trap lines. (Provided by the GEKU consortium) |
| BeetleAtlas | A database of Tribolium gene expression |