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Processing pipeline

The iBeetle processing pipeline can be used to process a list of identifiers like a list of differentially processed genes. The IDs can be converted and finally information from iBeetle-Base can be retrieved.

  1. Input a list of IDs on the left (FBgn, TC, iB, GO ID).
  2. Pull the required pipeline steps from the panel of available steps to the one with selected.
  3. Click the button 'Process pipeline' and check the results in the preview table
  4. Select the columns to export.
  5. Click on 'Export' and save the generated csv-file.
For a demonstration you can use the provided example.

The documentation of the REST interface (for programmatic access) can be found here.

1. Enter input IDs
2a. Available pipeline steps
Maps a FlyBase gene identifier to a list of ortholog or homolog Tribolium genes.
FlyBase gene ID TC homolog
Get the IDs of the Tribolium genes for the iBeetle fragments.
iB TC
Get the IDs of the iBeetle fragments for the Tribolium gene.
TC iB
Maps a Tribolium gene to list of ortholog or homolog FlyBase genes.
TC FlyBase gene ID homolog
Get the lethality on day 11 past larval injection annotated for the iB number
iB pupal lethality
Get the lethality on day 11 past larval injection annotated for the iB number
iB larval lethality day 11
Get the lethality on day 22 past larval injection annotated for the iB number
iB larval lethality day 22
Maps a FlyBase gene to its GO term IDs.
FlyBase gene ID GO ID (drosophila)
Maps a GO term ID to its GO term.
GO ID GO term
2b. Selected pipeline steps
Drop steps here
Preview table
(1 of 1)pppp
user input
No records found.
(1 of 1)pppp
4. Export columns