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Processing pipeline

The iBeetle processing pipeline can be used to process a list of identifiers like a list of differentially processed genes. The IDs can be converted and finally information from iBeetle-Base can be retrieved.

  1. Input a list of IDs on the left (FBgn, TC, iB, GO ID).
  2. Pull the required pipeline steps from the panel of available steps to the one with selected.
  3. Click the button 'Process pipeline' and check the results in the preview table
  4. Select the columns to export.
  5. Click on 'Export' and save the generated csv-file.
For a demonstration you can use the provided example.

The documentation of the REST interface (for programmatic access) can be found here.

1. Enter input IDs
2a. Available pipeline steps
Get the GO IDs that are assigned to the given Drosophila gene.
FBgn GO ID (Drosophila)
Get the Drosophila genes that are assigned to the given GO ID.
GO ID FBgn (Drosophila)
Get the GO term (CV) for the given GO ID.
GO ID GO term
Get the GO aspect for the given GO ID: Biological Process (BP), Cellular Component (CC), Biological Function (BF)
GO ID GO ascpect
Gets the lethality on day 11 post pupal injection.
iB pupal lethality
Gets the lethality on day 11 post larval injection.
iB larval lethality day 11
Gets the lethality on day 22 post larval injection.
iB larval lethality day 22
Gets the amount of eggs that stay on a slide after sieving 15 days after pupal injection.
iB embryonic lethality
Get the Tribolium genes an given iB dsRNAi fragment is mapped to.
iB TC
Get the ortholog and homolog Drosophila genes for a Tribolium gene.
TC FBgn
Get the ortholog and homolog Tribolium genes for a Drosophila gene.
FBgn TC
Get the symbol of a Drosophila gene identified by its FlyBase gene identifier.
FBgn symbol
Get the name of a Drosophila gene identified by its FlyBase gene identifier.
FBgn name
Get the GC number of a Drosophila gene identified by its FlyBase gene identifier.
FBgn GC
Get the IDs of the iBeetle dsRNA fragements which are mapped to a Tribolium gene.
TC iB
Get the gene symbol of a Tribolium gene identified by its TC number.
TC symbol
Get the TC Numbers of a gene identified by their gene symbol (well known symbol, the gene ID is used, prefixes wiht 'LOC').
symbol TC
Get the Tribolium genes an given iB dsRNAi fragment is mapped to.
iB TC
Get the ortholog and homolog Drosophila genes for a Tribolium gene.
TC FBgn
Get the ortholog and homolog Tribolium genes for a Drosophila gene.
FBgn TC
Get the symbol of a Drosophila gene identified by its FlyBase gene identifier.
FBgn symbol
Get the name of a Drosophila gene identified by its FlyBase gene identifier.
FBgn name
Get the GC number of a Drosophila gene identified by its FlyBase gene identifier.
FBgn GC
Get the IDs of the iBeetle dsRNA fragements which are mapped to a Tribolium gene.
TC iB
Get the gene symbol of a Tribolium gene identified by its TC number.
TC symbol
Get the TC Numbers of a gene identified by their gene symbol (well known symbol, the gene ID is used, prefixes wiht 'LOC').
symbol TC
Gets the lethality on day 11 post pupal injection.
iB pupal lethality
Gets the lethality on day 11 post larval injection.
iB larval lethality day 11
Gets the lethality on day 22 post larval injection.
iB larval lethality day 22
Gets the amount of eggs that stay on a slide after sieving 15 days after pupal injection.
iB embryonic lethality
2b. Selected pipeline steps
Drop steps here
Preview table
(1 of 1)pppp
user input
No records found.
(1 of 1)pppp
4. Export columns
Please choose the columns you would like to export.
Export with hyperlinks
Export with header