Status
Please wait ...
TrOn: Tribolium Ontology

One part of the iBeetle project is the creation of an anatomical ontology for Tribolium. The annotation of the ontology is an ongoing process. The current version can be browsed and downloaded below.

Ontology tree

The tree below displays the class hierarchy of the ontology. Next to the tree additional information for the selected term is displayed.

Tribolium Ontology
  • anatomical_entity
    • material_anatomical_entity
      • anatomical structure
        • multicellular_structure
          • multi_tissue_structure
            • gonad
Search & control

Search

Control

Expand all  Collapse all

Use the context menu to expand all children of a selected class.

Details
ID: TrOn_0000954
Name: ovary
Definition: "One of the most important parts of the female reproductive system in which ova are produced." [ISBN:3-11-014898-6]
Parent(s):
Relations:
Links to iB details pages

Links to iB detail views

Number of links of the selected node and all descending ones

The printed number is the amount of iBeetle data sets, which are linked to the current node and the downstream ones. For the downstream search the class hierarchy as well as the part_of relation ship is used. The later one is not displayed in the tree on the left, so that not all involved nodes can be seen directly in the ontology tree. For the caluclation of the number the same nodes are taken into account as in the algorithm for the "Search for morphological defects" (without developmental stage or any other selections made)
For example the descending nodes for adult_leg are:

  • adult_coxa
  • adult_cuticle_of_mesothoracic_leg
  • adult_femur
  • adult_leg
  • adult_mesothoracic_coxa
  • adult_mesothoracic_femur
  • adult_mesothoracic_tarsomere
  • adult_mesothoracic_tarsus
  • adult_metathoracic_femur
  • adult_metathoracic_leg
  • adult_metathoracic_pretarsus
  • adult_metathoracic_tarsus
  • adult_metathoracic_tibia
  • adult_pretarsus
  • adult_prothoracic_leg
  • adult_prothoracic_tarsomere
  • adult_prothoracic_tarsus
  • adult_tarsomere
  • adult_tarsus
  • adult_tibia

The list of hyperlinks belong all to the selected node.

1127 detail pages are linked to the selected node and descending ones. (following the is_a and part_of relations).

List of datasets linked directly to the selected ontology class:
iB_00038iB_00152iB_00171iB_00173iB_00187
iB_00187iB_00189iB_00200iB_00208iB_00221
iB_00228iB_00229iB_00236iB_00248iB_00260
iB_00278iB_00280iB_00291iB_00295iB_00301
iB_00323iB_00329iB_00342iB_00356iB_00371
iB_00387iB_00390iB_00392iB_00398iB_00406
iB_00415iB_00424iB_00428iB_00438iB_00447
iB_00459iB_00466iB_00487iB_00494iB_00494
iB_00507iB_00517iB_00537iB_00540iB_00551
iB_00564iB_00577iB_00586iB_00599iB_00599
iB_00616iB_00622iB_00629iB_00641iB_00642
iB_00657iB_00657iB_00664iB_00670iB_00676
iB_00724iB_00730iB_00755iB_00755iB_00758
iB_00764iB_00764iB_00765iB_00793iB_00796
iB_00806iB_00809iB_00821iB_00827iB_00838
iB_00841iB_00846iB_00848iB_00850iB_00851
iB_00851iB_00860iB_00872iB_00877iB_00893
iB_00894iB_00902iB_00910iB_00914iB_00921
iB_00922iB_00922iB_00926iB_00926iB_00928
iB_00949iB_00953iB_00984iB_00992iB_01044
iB_01089iB_01106iB_01111iB_01114iB_01132
iB_01136iB_01143iB_01144iB_01146iB_01161
iB_01180iB_01189iB_01190iB_01197iB_01200
iB_01220iB_01221iB_01225iB_01230iB_01236
iB_01236iB_01237iB_01250iB_01262iB_01306
iB_01328iB_01335iB_01351iB_01357iB_01368
iB_01368iB_01427iB_01429iB_01446iB_01454
iB_01470iB_01474iB_01477iB_01478iB_01492
iB_01505iB_01514iB_01517iB_01519iB_01519
iB_01544iB_01550iB_01554iB_01565iB_01606
iB_01611iB_01615iB_01635iB_01664iB_01669
iB_01681iB_01683iB_01695iB_01710iB_01723
iB_01732iB_01737iB_01763iB_01764iB_01791
iB_01805iB_01818iB_01839iB_01844iB_01861
iB_01886iB_01899iB_01903iB_01913iB_01918
iB_01931iB_01939iB_01973iB_01975iB_01977
iB_02017iB_02114iB_02189iB_02193iB_02196
iB_02197iB_02201iB_02206iB_02206iB_02212
iB_02212iB_02220iB_02225iB_02261iB_02270
iB_02278iB_02297iB_02297iB_02299iB_02308
iB_02335iB_02354iB_02362iB_02362iB_02393
iB_02413iB_02432iB_02434iB_02476iB_02491
iB_02493iB_02500iB_02505iB_02516iB_02556
iB_02563iB_02563iB_02573iB_02574iB_02588
iB_02590iB_02591iB_02602iB_02616iB_02616
iB_02620iB_02621iB_02621iB_02636iB_02639
iB_02657iB_02664iB_02668iB_02674iB_02681
iB_02682iB_02692iB_02707iB_02736iB_02754
iB_02758iB_02770iB_02774iB_02783iB_02790
iB_02809iB_02816iB_02817iB_02820iB_02832
iB_02834iB_02838iB_02857iB_02923iB_02945
iB_02957iB_02959iB_02963iB_02967iB_02975
iB_02987iB_03017iB_03028iB_03035iB_03073
iB_03076iB_03091iB_03110iB_03136iB_03155
iB_03160iB_03194iB_03195iB_03221iB_03248
iB_03283iB_03319iB_03325iB_03361iB_03367
iB_03401iB_03422iB_03455iB_03484iB_03502
iB_03516iB_03522iB_03524iB_03525iB_03530
iB_03534iB_03545iB_03550iB_03564iB_03574
iB_03589iB_03598iB_03614iB_03616iB_03622
iB_03633iB_03634iB_03637iB_03651iB_03655
iB_03684iB_03693iB_03709iB_03721iB_03756
iB_03760iB_03774iB_03780iB_03783iB_03810
iB_03815iB_03815iB_03827iB_03846iB_03846
iB_03869iB_03892iB_03913iB_03914iB_03942
iB_03961iB_03996iB_04038iB_04043iB_04050
iB_04068iB_04076iB_04081iB_04092iB_04097
iB_04137iB_04161iB_04172iB_04185iB_04186
iB_04196iB_04220iB_04227iB_04239iB_04253
iB_04254iB_04254iB_04258iB_04270iB_04275
iB_04277iB_04280iB_04282iB_04285iB_04299
iB_04304iB_04308iB_04313iB_04317iB_04321
iB_04321iB_04322iB_04326iB_04328iB_04357
iB_04361iB_04370iB_04376iB_04398iB_04412
iB_04425iB_04431iB_04454iB_04456iB_04459
iB_04462iB_04476iB_04499iB_04505iB_04510
iB_04514iB_04530iB_04543iB_04550iB_04564
iB_04577iB_04582iB_04582iB_04598iB_04603
iB_04606iB_04619iB_04623iB_04624iB_04627
iB_04631iB_04636iB_04642iB_04670iB_04681
iB_04694iB_04696iB_04697iB_04721iB_04733
iB_04744iB_04747iB_04747iB_04753iB_04766
iB_04770iB_04781iB_04806iB_04840iB_04846
iB_04850iB_04894iB_04894iB_04952iB_04982
iB_04997iB_05029iB_05039iB_05053iB_05074
iB_05083iB_05086iB_05133iB_05138iB_05139
iB_05163iB_05166iB_05178iB_05185iB_05209
iB_05209iB_05216iB_05218iB_05220iB_05272
iB_05275iB_05278iB_05280iB_05283iB_05287
iB_05287iB_05290iB_05302iB_05305iB_05305
iB_05349iB_05357iB_05367iB_05376iB_05397
iB_05398iB_05401iB_05436iB_05438iB_05439
iB_05465iB_05472iB_05480iB_05484iB_05492
iB_05501iB_05502iB_05515iB_05518iB_05547
iB_05563iB_05567iB_05582iB_05631iB_05654
iB_05669iB_05686iB_05709iB_05711iB_05712
iB_05720iB_05724iB_05734iB_05743iB_05767
iB_05801iB_05813iB_05816iB_05821iB_05829
iB_05855iB_05877iB_05929iB_05968iB_05984
iB_05990iB_06014iB_06017iB_06029iB_06032
iB_06044iB_06047iB_06073iB_06120iB_06249
iB_06285iB_06285iB_06314iB_06342iB_06361
iB_06388iB_06395iB_06459iB_06480iB_06488
iB_06513iB_06538iB_06564iB_06571iB_06575
iB_06673iB_06692iB_06750iB_06767iB_06886
iB_06915iB_06917iB_06985iB_07054iB_07056
iB_07095iB_07144iB_07189iB_07190iB_07205
iB_07216iB_07238iB_07295iB_07304iB_07305
iB_07341iB_07350iB_07399iB_07435iB_07447
iB_07490iB_07663iB_07725iB_07868iB_07894
iB_07948iB_07960iB_07964iB_08072iB_08090
iB_08108iB_08108iB_08138iB_08205iB_08211
iB_08233iB_08251iB_08279iB_08327iB_08345
iB_08415iB_08468iB_08567iB_08638iB_08654
iB_08710iB_08835iB_08861iB_08916iB_08935
iB_08981iB_08988iB_08998iB_09021iB_09048
iB_09050iB_09074iB_09103iB_09111iB_09120
iB_09133iB_09136iB_09152iB_09153iB_09155
iB_09217iB_09265iB_09294iB_09320iB_09383
iB_09406iB_09414iB_09421iB_09436iB_09460
iB_09542iB_09544iB_09592iB_09606iB_09630
iB_09638iB_09647iB_09672iB_09684iB_09733
iB_09823iB_09892iB_09996iB_10000iB_10069
iB_10119iB_10181iB_10220iB_10310iB_10459
iB_10526iB_10544iB_10575iB_10615iB_10616
iB_10619iB_10656iB_10991iB_11012
Publication
The Tribolium Ontology is published in:

Dönitz, J., Großmann, D., Schild, I., Schmitt-Engel, C., Bradler, S., Prpic, N.-M. and Bucher, G. (2013):
TrOn: An anatomical ontology for the beetle Tribolium castaneum
PLoS ONE 8(7): e70695. doi:10.1371/journal.pone.0070695.

OntoScope

OntoScope is a graphical ontology viewer developed at the Dept. of Bioinformatics of the University Medical Center Göttingen (UMG). The link below will start OntoScope as Java Web Start application, with the ontologies of Tribolium and Drosophila loaded.

OntoScope is still in the beta phase, more information is available at the homepage of the project.

Launch OntoScope
OBA server
Within the iBeetle project the OBA service is used to access the ontology. The oba service with the Tribolium ontology can also be integrate the ontology in other projects. The address of a public oba server providing the Tribolium ontology is: http://oba.sybig.de
Download
The Tribolium ontology can also be downloaded in the OBO format: tribolium.obo