Status
Please wait ...
TrOn: Tribolium Ontology

One part of the iBeetle project is the creation of an anatomical ontology for Tribolium. The annotation of the ontology is an ongoing process. The current version can be browsed and downloaded below.

Ontology tree

The tree below displays the class hierarchy of the ontology. Next to the tree additional information for the selected term is displayed.

Tribolium Ontology
  • anatomical_entity
    • material_anatomical_entity
      • anatomical structure
        • multicellular_structure
          • organism subdivision
            • anterior_posterior_subdivision_of_organism
              • segment
                • abdominal_segment
                • larva_segment
Search & control

Search

Control

Expand all  Collapse all

Use the context menu to expand all children of a selected class.

Details
ID: TrOn_0000366
Name: larva_abdominal_segment
Definition: "Any segment (FBbt:00000003) that is part of some larval abdomen (FBbt:00001746)." [FBC:auto_genrated_defintion]
Parent(s):
Relations:
Links to iB details pages

Links to iB detail views

Number of links of the selected node and all descending ones

The printed number is the amount of iBeetle data sets, which are linked to the current node and the downstream ones. For the downstream search the class hierarchy as well as the part_of relation ship is used. The later one is not displayed in the tree on the left, so that not all involved nodes can be seen directly in the ontology tree. For the caluclation of the number the same nodes are taken into account as in the algorithm for the "Search for morphological defects" (without developmental stage or any other selections made)
For example the descending nodes for adult_leg are:

  • adult_coxa
  • adult_cuticle_of_mesothoracic_leg
  • adult_femur
  • adult_leg
  • adult_mesothoracic_coxa
  • adult_mesothoracic_femur
  • adult_mesothoracic_tarsomere
  • adult_mesothoracic_tarsus
  • adult_metathoracic_femur
  • adult_metathoracic_leg
  • adult_metathoracic_pretarsus
  • adult_metathoracic_tarsus
  • adult_metathoracic_tibia
  • adult_pretarsus
  • adult_prothoracic_leg
  • adult_prothoracic_tarsomere
  • adult_prothoracic_tarsus
  • adult_tarsomere
  • adult_tarsus
  • adult_tibia

The list of hyperlinks belong all to the selected node.

375 detail pages are linked to the selected node and descending ones. (following the is_a and part_of relations).

List of datasets linked directly to the selected ontology class:
iB_00067iB_00133iB_00227iB_00271iB_00276
iB_00286iB_00579iB_00838iB_00896iB_00908
iB_00908iB_00908iB_00966iB_00966iB_00983
iB_00990iB_00992iB_01051iB_01062iB_01185
iB_01187iB_01214iB_01326iB_01352iB_01379
iB_01395iB_01454iB_01464iB_01475iB_01481
iB_01513iB_01513iB_01526iB_01588iB_01635
iB_01653iB_01710iB_01719iB_01722iB_01746
iB_01757iB_01767iB_01893iB_01896iB_01957
iB_01957iB_01967iB_01983iB_02051iB_02190
iB_02207iB_02260iB_02265iB_02273iB_02306
iB_02327iB_02340iB_02340iB_02391iB_02405
iB_02414iB_02437iB_02441iB_02451iB_02520
iB_02535iB_02543iB_02555iB_02603iB_02604
iB_02610iB_02622iB_02643iB_02661iB_02661
iB_02693iB_02712iB_02759iB_02802iB_02844
iB_02875iB_02888iB_02920iB_02954iB_02956
iB_02965iB_02989iB_02989iB_02993iB_03064
iB_03082iB_03085iB_03093iB_03110iB_03113
iB_03119iB_03119iB_03124iB_03171iB_03171
iB_03175iB_03188iB_03188iB_03220iB_03252
iB_03252iB_03289iB_03296iB_03303iB_03304
iB_03365iB_03377iB_03378iB_03391iB_03397
iB_03400iB_03443iB_03474iB_03496iB_03526
iB_03623iB_03669iB_03690iB_03697iB_03698
iB_03759iB_03770iB_03772iB_03796iB_03798
iB_03831iB_03849iB_03859iB_03861iB_03881
iB_03882iB_03887iB_03889iB_03893iB_03898
iB_03926iB_03932iB_03978iB_03979iB_03981
iB_03996iB_04000iB_04008iB_04008iB_04014
iB_04018iB_04029iB_04032iB_04041iB_04057
iB_04066iB_04090iB_04146iB_04152iB_04190
iB_04203iB_04210iB_04210iB_04222iB_04224
iB_04227iB_04227iB_04247iB_04252iB_04288
iB_04315iB_04347iB_04385iB_04399iB_04407
iB_04409iB_04423iB_04426iB_04439iB_04460
iB_04471iB_04474iB_04482iB_04487iB_04516
iB_04557iB_04564iB_04600iB_04629iB_04643
iB_04643iB_04645iB_04693iB_04716iB_04720
iB_04762iB_04791iB_04829iB_04836iB_04836
iB_04886iB_04905iB_04937iB_04944iB_04952
iB_04983iB_05018iB_05064iB_05072iB_05074
iB_05117iB_05125iB_05133iB_05139iB_05155
iB_05160iB_05219iB_05223iB_05245iB_05252
iB_05299iB_05340iB_05358iB_05405iB_05424
iB_05451iB_05456iB_05481iB_05493iB_05498
iB_05507iB_05513iB_05522iB_05590iB_05758
iB_05790iB_05807iB_05860iB_05864iB_05898
iB_05907iB_05916iB_05934iB_05955iB_05975
iB_05994iB_06052iB_06053iB_06083iB_06235
iB_06274iB_06284iB_06289iB_06310iB_06359
iB_06366iB_06391iB_06391iB_06391iB_06428
iB_06451iB_06459iB_06512iB_06527iB_06616
iB_06659iB_06663iB_06691iB_06699iB_06709
iB_06721iB_06728iB_06740iB_06740iB_06764
iB_06815iB_06868iB_06872iB_06892iB_06907
iB_06916iB_06939iB_06962iB_07008iB_07022
iB_07025iB_07092iB_07106iB_07137iB_07168
iB_07178iB_07208iB_07219iB_07278iB_07285
iB_07295iB_07295iB_07297iB_07304iB_07490
iB_07533iB_07546iB_07782iB_07788iB_07862
iB_07902iB_07917iB_07951iB_08037iB_08086
iB_08105iB_08131iB_08147iB_08234iB_08241
iB_08265iB_08480iB_08480iB_08506iB_08541
iB_08542iB_08561iB_08577iB_08590iB_08594
iB_08611iB_08625iB_08632iB_08640iB_08691
iB_08907iB_08908iB_09011iB_09013iB_09013
iB_09133iB_09149iB_09159iB_09244iB_09278
iB_09278iB_09377iB_09395iB_09440iB_09471
iB_09476iB_09533iB_09586iB_09587iB_09649
iB_09763iB_09797iB_09801iB_09801iB_09836
iB_09881iB_09897iB_09980iB_09987iB_09991
iB_10013iB_10072iB_10262iB_10316iB_10332
iB_10343iB_10477iB_10489iB_10565iB_10571
iB_10573iB_10575iB_10577iB_10577iB_10619
iB_10637iB_10645iB_10652iB_10654iB_10664
iB_10666iB_10688iB_10688iB_10694iB_10694
iB_10694iB_10712iB_10718iB_10738iB_10969
iB_10969iB_10972iB_10978iB_10978iB_10978
iB_11023
Publication
The Tribolium Ontology is published in:

Dönitz, J., Großmann, D., Schild, I., Schmitt-Engel, C., Bradler, S., Prpic, N.-M. and Bucher, G. (2013):
TrOn: An anatomical ontology for the beetle Tribolium castaneum
PLoS ONE 8(7): e70695. doi:10.1371/journal.pone.0070695.

OntoScope

OntoScope is a graphical ontology viewer developed at the Dept. of Bioinformatics of the University Medical Center Göttingen (UMG). The link below will start OntoScope as Java Web Start application, with the ontologies of Tribolium and Drosophila loaded.

OntoScope is still in the beta phase, more information is available at the homepage of the project.

Launch OntoScope
OBA server
Within the iBeetle project the OBA service is used to access the ontology. The oba service with the Tribolium ontology can also be integrate the ontology in other projects. The address of a public oba server providing the Tribolium ontology is: http://oba.sybig.de
Download
The Tribolium ontology can also be downloaded in the OBO format: tribolium.obo