General information | |||
TC013541 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007420.3: 8260870..8264073 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
||
Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC013541 |
GO terms for Tribolium
-
{{ goTerm.term }} ({{ goTerm.evidence }}){{ goTerm.evidenceTooltip }}{{goTerm.showAll ? '[-]' : '[+]'}}Status: {{ goTerm.status }}
Evidence: {{ goTerm.evidence }} ({{ goTerm.evidenceTooltip }})
Reference: {{ goTerm.referenceText }}
Quotation: {{ goTerm.quotation }}
Submitter: {{ goTerm.name }}
There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
Gene | {{ goGene }} |
|
---|---|---|
GO ID | * {{ blurIdResult }} |
|
Evidence | {{ blurEvidenceResult }} |
|
Reference | * {{ blurReferenceResult }} |
|
Quotation | ||
Name | ||
Publish name | ||
{{ unavailableText }} |
* : mandatory fields
Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_11025 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 0.0% (includes death as pupa, adult)
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC013541 RA
MKSNYFNVQ IIALFMLSL IPWPGPTVF KISCPRDNA RIVRKIIQN KWIPILEKY KVSLPIECP FHPIRDIFG PQQAAKQQH RPSQWTCGL CGKSFFEEK YLDMHFDNR HKGFINMAE DAVCLADYC DIMRCDVLI TQDPKTVYP DTVNTDIEI WREASSYTK ALATSGPRE VAKYTFKDG IYPHLQKSG KATKPTKHC QKNEAPEAP NSNEERQSA GDDDKLQNS SNNVCQNDL VDSALPAPD NRQQRIAEL QKLKANCKP EELQKIKTK CEILVRDCI AGLLIQLSV KDFKEVEDE LNRAVCWYL TCDRYWEDT QGDIRSFPW GLLCMIIMV LSLGICMCY YIIWVLFDT DDVSVASAS MTDRSTPSP AHVHRHEPP PQADGHQIY TEDYYLAPD KDNEYIYVT YPPDLKRRL LESCYNRTT RL
- >TC013541 RA
atgaagtcc aattatttc aacgtgcag ataattgcg ttgtttatg ctttcgttg atcccatgg ccggggccc acagttttc aaaatctcg tgtccgcga gataatgcc cgaatcgtg cggaaaata atccagaac aaatggata ccgatttta gaaaaatac aaagtcagt ctgcccatc gagtgcccc ttccacccc attagggac atcttcggg ccccagcag gccgccaaa cagcagcac cggccctcg caatggacg tgcggcctc tgcggcaag tcgtttttc gaggagaaa tacctggac atgcatttc gacaatcgc cataagggt ttcataaat atggccgaa gacgccgtg tgccttgca gactactgc gacattatg agatgtgac gtcttgata acgcaagac cccaaaacc gtctatcca gacaccgtc aacacggat atagaaatc tggcgcgaa gcttcctcg tacaccaaa gccttggcg acgtccggc ccacgcgaa gtcgccaaa tacaccttc aaggatggg atttacccc catctgcaa aaaagcgga aaagcaacg aagcccacc aagcattgc cagaagaat gaagcaccg gaagcgcct aatagcaac gaagagcgc caatctgca ggcgacgac gataaattg cagaatagt tcgaataat gtgtgtcaa aatgatttg gtggattcg gctttgccg gcaccggac aacaggcag cagagaata gccgaactg caaaagttg aaagcgaat tgtaaaccg gaagaactg cagaaaatt aagacgaag tgcgagatt ttggtgcgc gattgcatc gcggggctg ctaattcaa ctctcggtg aaagatttt aaagaagtt gaagacgag ttaaacagg gctgtctgt tggtacttg acgtgtgac cggtactgg gaggatacg cagggggat atccgcagc ttcccttgg ggtttgctc tgtatgata ataatggtt ctgtccctc ggcatctgc atgtgttac tacatcatt tgggtcttg ttcgacacc gatgacgtc agtgttgct agtgctagt atgaccgat agatcgacg ccttcgccg gctcatgtc catcggcat gagcctcca ccacaggca gacggtcac caaatttac acagaggat tattacctg gctccagat aaagataac gaatacata tacgtaact tatcctcct gatttaaaa cgacggctt ttagaaagc tgctacaat cgaactacc cgcttgtga
- >TC013541 RA
aagtggcgt aataagtga ataattaac cgatttccg aaggctaaa tgaccgtga atgtcgcct agcaacttg cggcgacgt ccagcgtct tcggcgtcg tagcatacg atgctttct aaatgccac aagaaaggt agagttttc tttcatcct agtaccggt aaagaatat gaatgaagt ccaattatt tcaacgtgc agataattg cgttgttta tgctttcgt tgatcccat ggccggggc ccacagttt tcaaaatct cgtgtccgc gagataatg cccgaatcg tgcggaaaa taatccaga acaaatgga taccgattt tagaaaaat acaaagtca gtctgccca tcgagtgcc ccttccacc ccattaggg acatcttcg ggccccagc aggccgcca aacagcagc accggccct cgcaatgga cgtgcggcc tctgcggca agtcgtttt tcgaggaga aatacctgg acatgcatt tcgacaatc gccataagg gtttcataa atatggccg aagacgccg tgtgccttg cagactact gcgacatta tgagatgtg acgtcttga taacgcaag accccaaaa ccgtctatc cagacaccg tcaacacgg atatagaaa tctggcgcg aagcttcct cgtacacca aagccttgg cgacgtccg gcccacgcg aagtcgcca aatacacct tcaaggatg ggatttacc cccatctgc aaaaaagcg gaaaagcaa cgaagccca ccaagcatt gccagaaga atgaagcac cggaagcgc ctaatagca acgaagagc gccaatctg caggcgacg acgataaat tgcagaata gttcgaata atgtgtgtc aaaatgatt tggtggatt cggctttgc cggcaccgg acaacaggc agcagagaa tagccgaac tgcaaaagt tgaaagcga attgtaaac cggaagaac tgcagaaaa ttaagacga agtgcgaga ttttggtgc gcgattgca tcgcggggc tgctaattc aactctcgg tgaaagatt ttaaagaag ttgaagacg agttaaaca gggctgtct gttggtact tgacgtgtg accggtact gggaggata cgcaggggg atatccgca gcttccctt ggggtttgc tctgtatga taataatgg ttctgtccc tcggcatct gcatgtgtt actacatca tttgggtct tgttcgaca ccgatgacg tcagtgttg ctagtgcta gtatgaccg atagatcga cgccttcgc cggctcatg tccatcggc atgagcctc caccacagg cagacggtc accaaattt acacagagg attattacc tggctccag ataaagata acgaataca tatacgtaa cttatcctc ctgatttaa aacgacggc ttttagaaa gctgctaca atcgaacta cccgcttgt gagacctag tacgaagag atcgtttag ctcaatttt tatttattt tgtagactt tttaaacag actccatac tgaaaacat tccaaaatt ataagtagg ggaatactc aaatgtatt aaagtttta caaaactta atactttta agtaatttt ctgtttcta tctagattg tagtttaga cataattcg aatttggta gccaatagc tggactgag cctttttcc cttaaaaat actttaatt ttaatcgaa cagtagatg gtggcataa tttttgaac gtcatacat ttcgtacga aataaaatc ggaattttg tttcactgc ttgctgtct catgccttg accattaac atgaaaaaa acggaattt aaattcttg tccttgtac ctaagataa tccaagctg aattccatc ctacgatta ccaaacaaa ctcagatac aatttgtta caactaggt gtagtcttt agcgtaata attagcttg atgttactt tgtttttat tgcaacgat gtacataat gatagttgg ataactttt gtacatgtg aaatacttt actatgcac ctttttgag cattgcaat gaatgtaaa tttacatct ttaaaacca tgttcataa tttataaaa atgtaataa tattcaagg atcataata aagatttaa tattgaa
