Status
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Gene information
General information
TC006161 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007423.3: 4143394..4147424
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
      TC006161
      Gene ontology

      GO terms for Tribolium

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      There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


      GO terms for the homologous Drosophila genes


      Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


      Gene
      {{ goGene }}
      The Tribolium gene the GO term is assigned to.
      GO ID *
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      The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
      Evidence
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      The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
      Reference *
      {{ blurReferenceResult }}
      The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
      Quotation
      If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
      Name
      You may enter your name. The contact information can help us to clarify any questions. If you agree, we may show your name on this page to honor your contribution.
      Email
      We will use your email address only for possible questions regarding this annotation. We will never show your address or give it away.
      Publish name
      If you have entered your name and agree by marking the checkbox. we might show your name on this page to honor your contribution.
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      * : mandatory fields
      For help on how to submit larger datasets or non experimental data please contact us.
      iBeetle screen iB_10952

      Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

      iB sequence
      Phenotype after pupal injection
      Usually 10 injected animals

      Pupal injection procedure

      Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

      3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

      9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

      11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

      Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

      13 dpi: Egg productivity and Ovary analysis
      The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

      14 dpi: Analysis of embryonic musculature and early embryonic development
      Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

      15 dpi: Analysis of larval instar 1 cuticle
      Offspring of injected females were analysed and cuticle phenotypes were annotated.

      22 dpi: Stink gland analysis
      Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

      Terms used in the pupal injection procedure

      larval pantagmatic defects
      At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
      empty eggs
      Just empty shells are visible, no cuticle has been developed.
      strong defects
      L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
      strongly fragmented (cuticle crumbs)
      No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
      cuticle remnants (with unidentifiable segments)
      Segments or parts of appendages are recognizable, but identity is not clear.
      cuticle remnants (with some identifiable segments)
      At least one segment or appendage is clearly regonizable.
      number of eggs on slide
      affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
      For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
      total number of affected eggs/embryos/larvae
      Summary of all different phenotypes/ phenotypic series which were annotated.
      inside-out
      The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
      starved
      Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
      eclosion not fulfilled
      The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
      Please see the help page for more information
      Metamorphosis and survival

      Lethality 11 days after pupal injection: 30.0% (includes death as pupa, adult)

      eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)
      Days post injection


      adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
      Days post injection


      Analysis of larval stage 1 cuticle
      number of eggs/embryos/larvae on slide: < 20
      Phenotype after larval injection
      Usually 10 injected animals

      Larval injection procedure

      Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

      11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

      16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

      19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

      22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

      41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

      Terms used in the larval injection procedure

      pupal/ adult pantagmatic defects
      At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
      pupal molt not fulfilled
      The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
      eclosion not fulfilled
      The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
      starved
      Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
      Metamorphosis and survival

      Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
      Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

      RNAi sequence
      Primers
      Left: Right:
      Protein sequence
      • >TC006161 RA
        MATSWFFVA IVPLVLCLQ PKIVMVPQF GRVSQVMDF 
        TLNSNIKYL LLYHPQNNN NPYSIKAWS DSASPQNPI 
        LIVVNQGID TLSWSVPYS IFSQSEVYY HTSRTLCDS 
        HNQNFTITL STSAPTNTK LSMIVEEER FFHLVNGKR 
        HTIEISPSE PRYFSYDYV PQSHSSLVT IEIDSDDET 
        CLMVSVQKH TCPVLDLNN FINYQGFHQ TILTKGGMR 
        IRKKYYTGG FFLVFTVVE DEVCKKKDL PIIPNQNQS 
        STVHFTVTE NIESKNHYI PAVFIVLAC FILFSFVAI 
        AIFCVFERY RKKKIAENT EQIAINVDE KTEEEITKE 
        EITEEEIHE ERDENNQQI PNNVADFSQ NTQKNQKRS 
        MNYLWQILN VGLFYIIPV IQLVVTLQS FLIQTGDFD 
        LCYYNFRCA NPLWIISDF NHVFSNIGY ILMGIVFSI 
        NVFYRHFYS PPLTTGVPA NYGVFYAMG AALIMEGVL 
        SGCYHLCPN ETNFQFDTS FMYVMIVLC LVKLYQNRH 
        PDVTPTAYT TFSILGATI LCGTIGIVF KAPPVFIVF 
        VTIAYLVLL IYASLNIYH FGTARNFLR RCCLRNSEV 
        PRPIQSPNT HRWWLLLLA ITVNILLYG LGLILFYHT 
        KTIDFATFI LQILAGNAF LYTVVYTCM KIKCTSVRE 
        CTCSEKICA QAIIYGFLA LVTWVLAGV FFFAEASKW 
        TESPAQSRQ LNKQCIFAD FYDSHDLWH FFSSLALYF 
        TFMYLLCID DNLYTNRAD IPLF
      CDS sequence
      • >TC006161 RA
        atggctaca agttggttc tttgtggca attgtgcct 
        ttggttctg tgtttacaa cccaaaatt gtaatggta 
        ccacaattc gggagagtg tctcaagtg atggatttc 
        accttaaat agcaacatc aaatattta cttctctat 
        cacccccaa aacaacaat aatccgtac tctatcaag 
        gcttggagc gattctgcg tcgcctcaa aatccaatt 
        ttgatcgtc gtcaatcag ggaattgac accttgtca 
        tggtcggta ccctattcc attttcagt caatctgaa 
        gtttattat cacacttcc cggaccttg tgcgactcg 
        cataatcaa aattttacc attacttta tcgacttcg 
        gcacccact aacacaaaa ctgtcgatg attgtcgaa 
        gaagagcgt ttttttcat ttagtaaac ggcaaaaga 
        cacacaatt gaaatatca ccgagcgaa cctcgatat 
        ttttcctac gactatgtg cctcaaagt cacagctca 
        cttgttacc atcgaaatt gattcagac gatgagacc 
        tgcctcatg gtttcagtc cagaaacat acatgccca 
        gttttggac ttaaataat ttcatcaat tatcaaggt 
        tttcaccaa acgattctc acaaaaggc ggcatgagg 
        attagaaaa aaatactac actggtgga ttctttctt 
        gtgtttact gtcgtagaa gatgaagtg tgtaagaaa 
        aaggacctt ccaattatc cccaaccag aatcaatcc 
        tccactgtg catttcaca gtaactgaa aatatagaa 
        agcaaaaat cactacata ccggcagtt tttatcgtt 
        cttgcttgc tttatcctg ttcagcttt gtcgcaatc 
        gccatattt tgtgttttc gaaagatac agaaaaaag 
        aaaattgcg gaaaatacg gaacaaatt gcaataaat 
        gtagatgaa aaaacggaa gaagagata acgaaagaa 
        gagataacg gaagaagag attcatgag gagagggat 
        gaaaacaac cagcaaatt ccgaataat gtggctgac 
        ttttcgcaa aatacccaa aagaaccaa aaacgctca 
        atgaactat ttgtggcaa atcttaaac gtgggtctt 
        ttttacata attccagtc atccaactt gtggtgaca 
        cttcaatca tttctcatc caaaccgga gatttcgac 
        ctgtgctac tacaatttc cgatgcgct aacccgctc 
        tggattatt tcagatttt aatcatgtt ttttcaaac 
        attggctac attctgatg ggaattgta ttcagcatc 
        aatgttttt tatcgtcat ttttactcg ccaccactg 
        actaccgga gtaccagct aattatggt gttttttac 
        gccatgggt gctgcgtta attatggaa ggtgtattg 
        tcggggtgc taccatttg tgtcccaat gaaacaaac 
        ttccaattc gacaccagt ttcatgtat gttatgatt 
        gtgctgtgt ttggtgaag ttgtaccaa aaccgacac 
        ccagatgtt acaccaacg gcttacacc acctttagc 
        atacttgga gcaacgatt ttgtgcggc acgattggt 
        atagtgttc aaggcccct cccgtgttc attgttttc 
        gtaacaatc gcctatcta gttttgttg atttacgca 
        tctttgaac atttaccac tttggaact gctcgcaac 
        tttttgcgc cgctgttgt cttcgaaat tcggaagtc 
        ccaagaccc atccaatcg ccaaacacg catcgttgg 
        tggttactc cttcttgca ataacagtc aatatctta 
        ctgtacggt ttgggacta attttgttt taccacaca 
        aaaacaatc gattttgca acctttatt ttacaaatt 
        ctggcagga aacgcgttt ctatacaca gtggtgtac 
        acctgcatg aagatcaag tgcacgagt gttcgagaa 
        tgtacttgt agcgaaaaa atttgtgct caagcaatt 
        atttatggg tttctggca ttggtgact tgggtgcta 
        gctggggta tttttcttt gccgaggcc tcaaaatgg 
        acggaaagc ccagctcag tctcgccaa ctcaacaaa 
        cagtgcatt tttgcggac ttttacgac agtcatgat 
        ctttggcac tttttcagc tccttggct ctgtatttc 
        accttcatg tatttgttg tgtatcgac gacaatctt 
        tacacaaac cgcgccgac atccccttg ttctaa
      mRNA sequence
      • >TC006161 RA
        atggctaca agttggttc tttgtggca attgtgcct 
        ttggttctg tgtttacaa cccaaaatt gtaatggta 
        ccacaattc gggagagtg tctcaagtg atggatttc 
        accttaaat agcaacatc aaatattta cttctctat 
        cacccccaa aacaacaat aatccgtac tctatcaag 
        gcttggagc gattctgcg tcgcctcaa aatccaatt 
        ttgatcgtc gtcaatcag ggaattgac accttgtca 
        tggtcggta ccctattcc attttcagt caatctgaa 
        gtttattat cacacttcc cggaccttg tgcgactcg 
        cataatcaa aattttacc attacttta tcgacttcg 
        gcacccact aacacaaaa ctgtcgatg attgtcgaa 
        gaagagcgt ttttttcat ttagtaaac ggcaaaaga 
        cacacaatt gaaatatca ccgagcgaa cctcgatat 
        ttttcctac gactatgtg cctcaaagt cacagctca 
        cttgttacc atcgaaatt gattcagac gatgagacc 
        tgcctcatg gtttcagtc cagaaacat acatgccca 
        gttttggac ttaaataat ttcatcaat tatcaaggt 
        tttcaccaa acgattctc acaaaaggc ggcatgagg 
        attagaaaa aaatactac actggtgga ttctttctt 
        gtgtttact gtcgtagaa gatgaagtg tgtaagaaa 
        aaggacctt ccaattatc cccaaccag aatcaatcc 
        tccactgtg catttcaca gtaactgaa aatatagaa 
        agcaaaaat cactacata ccggcagtt tttatcgtt 
        cttgcttgc tttatcctg ttcagcttt gtcgcaatc 
        gccatattt tgtgttttc gaaagatac agaaaaaag 
        aaaattgcg gaaaatacg gaacaaatt gcaataaat 
        gtagatgaa aaaacggaa gaagagata acgaaagaa 
        gagataacg gaagaagag attcatgag gagagggat 
        gaaaacaac cagcaaatt ccgaataat gtggctgac 
        ttttcgcaa aatacccaa aagaaccaa aaacgctca 
        atgaactat ttgtggcaa atcttaaac gtgggtctt 
        ttttacata attccagtc atccaactt gtggtgaca 
        cttcaatca tttctcatc caaaccgga gatttcgac 
        ctgtgctac tacaatttc cgatgcgct aacccgctc 
        tggattatt tcagatttt aatcatgtt ttttcaaac 
        attggctac attctgatg ggaattgta ttcagcatc 
        aatgttttt tatcgtcat ttttactcg ccaccactg 
        actaccgga gtaccagct aattatggt gttttttac 
        gccatgggt gctgcgtta attatggaa ggtgtattg 
        tcggggtgc taccatttg tgtcccaat gaaacaaac 
        ttccaattc gacaccagt ttcatgtat gttatgatt 
        gtgctgtgt ttggtgaag ttgtaccaa aaccgacac 
        ccagatgtt acaccaacg gcttacacc acctttagc 
        atacttgga gcaacgatt ttgtgcggc acgattggt 
        atagtgttc aaggcccct cccgtgttc attgttttc 
        gtaacaatc gcctatcta gttttgttg atttacgca 
        tctttgaac atttaccac tttggaact gctcgcaac 
        tttttgcgc cgctgttgt cttcgaaat tcggaagtc 
        ccaagaccc atccaatcg ccaaacacg catcgttgg 
        tggttactc cttcttgca ataacagtc aatatctta 
        ctgtacggt ttgggacta attttgttt taccacaca 
        aaaacaatc gattttgca acctttatt ttacaaatt 
        ctggcagga aacgcgttt ctatacaca gtggtgtac 
        acctgcatg aagatcaag tgcacgagt gttcgagaa 
        tgtacttgt agcgaaaaa atttgtgct caagcaatt 
        atttatggg tttctggca ttggtgact tgggtgcta 
        gctggggta tttttcttt gccgaggcc tcaaaatgg 
        acggaaagc ccagctcag tctcgccaa ctcaacaaa 
        cagtgcatt tttgcggac ttttacgac agtcatgat 
        ctttggcac tttttcagc tccttggct ctgtatttc 
        accttcatg tatttgttg tgtatcgac gacaatctt 
        tacacaaac cgcgccgac atccccttg ttctaaaat 
        atgtaatct tttttgtat tttttgtat tttgaataa 
        aaaatgcat agtaa
      The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY