General information | |||
TC010407 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007420.3: 7601061..7629778 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC010407 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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* : mandatory fields
Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_09082 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 0.0% (includes death as pupa, adult)
affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): more than 80%
remarks: muscle pattern potentially obscured by segmentation defect,
larva dorsal bent - Penetrance (percentage of animals/eggs on slide): more than 80%
vertex triplet vertex triplet posterior complete not present - Penetrance (percentage of animals/eggs on slide): more than 80%
bell row number decreased - Penetrance (percentage of animals/eggs on slide): more than 80%
affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): more than 80%
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC010407 RA
MFHTSGGGG GYSDGNAGF HQHLQQSPV YVPSSRAVP QYPSPASGH FGAAAHQSS WAHAGGTYG EMAAPSAHS LGTSPHAGA LSAGQFYAQ NMMMSSWRA YDGTGFQRT SPYDGSMEF QFGEGRECV NCGAISTPL WRRDGTGHY LCNACGLYH KMNGMNRPL IKPSKRLTA TRRLGLCCT NCGTRTTTL WRRNNDGEP VCNACGLYF KLHGVNRPL AMRKDGIQT RKRKPKKPV GGERDDSSS ASVEETKSL VHQSSQQHS SQSQSQTHH NHQLDKSSP VERPYLGQT SLLPATSTS AIKSEPGYE YSCIQNQPS YPYQQIFGF PGSANSSGE VAYHHQHHV TAAAKLMAS S
- >TC010407 RA
atgttccat acaagcggt ggtggtgga ggatacagc gacggcaac gcgggtttc caccagcat ctgcagcaa tctcccgtt tacgttcca agcagtaga gcagtgccc cagtatcct tctcctgcg agtgggcat ttcggggct gctgctcac cagagtagt tgggctcac gctggtgga acgtacggc gaaatggca gccccatct gcacacagc ttggggact tcgccacat gctggtgct ttatcagct gggcagttt tatgcccag aatatgatg atgagctcg tggagagcc tacgatggg actggattt caaaggacg tctccgtat gacggaagc atggagttt cagttcggc gaggggcgc gagtgtgta aactgcggc gccatttcg acgccgcta tggcgtcgc gacggcacg ggccattat ttgtgcaat gcttgtggg ctttaccac aaaatgaac ggcatgaac cgaccacta ataaaacca tcaaaacga ttgacggcg acccggaga ttagggctg tgctgcacg aactgtggg acgcggacg acgacatta tggcgtcgg aacaacgac ggagaacct gtttgtaac gcctgcgga ttatacttc aaattacac ggcgtgaac cggccttta gccatgagg aaggacggc atacaaaca cgcaaacgc aaaccgaag aagcctgtt ggcggggaa cgtgatgat agcagctcc gcctccgtt gaagaaaca aaatctctc gttcaccaa tcctcgcaa caacactcg tcgcaatct caatcgcaa acccatcac aaccatcag ctcgacaaa tcatcgccg gtggagcgc ccatatctg ggccaaacc tccctctta cctgccaca agtacaagt gccatcaaa agcgagccc gggtacgaa tacagctgc atacagaac cagccgtcg tatccttac caacaaata tttgggttt cctggttcg gccaacagc agcggggag gttgcctac caccaccaa caccacgtt actgccgcc gccaaacta atggcctcg tcttag
- >TC010407 RA
agtcagttg ctacgaagg ttgaaagct ctcgtcacg ttgtccgtt caactttca actagctta attaagctc ggagctttc tcgttgttt atgccacag tggaccaga tttagtgaa gtttaaagt tgtttgttt attatttgt ttgttttgt tattaagtg acgaaaaaa caacgtttt gaataaccg gcaaaaggg atgattaga aaatagttt tccttctcc atcttcgac catgttcca tacaagcgg tggtggtgg aggatacag cgacggcaa cgcgggttt ccaccagca tctgcagca atctcccgt ttacgttcc aagcagtag agcagtgcc ccagtatcc ttctcctgc gagtgggca tttcggggc tgctgctca ccagagtag ttgggctca cgctggtgg aacgtacgg cgaaatggc agccccatc tgcacacag cttggggac ttcgccaca tgctggtgc tttatcagc tgggcagtt ttatgccca gaatatgat gatgagctc gtggagagc ctacgatgg gactggatt tcaaaggac gtctccgta tgacggaag catggagtt tcagttcgg cgaggggcg cgagtgtgt aaactgcgg cgccatttc gacgccgct atggcgtcg cgacggcac gggccatta tttgtgcaa tgcttgtgg gctttacca caaaatgaa cggcatgaa ccgaccact aataaaacc atcaaaacg attgacggc gacccggag attagggct gtgctgcac gaactgtgg gacgcggac gacgacatt atggcgtcg gaacaacga cggagaacc tgtttgtaa cgcctgcgg attatactt caaattaca cggcgtgaa ccggccttt agccatgag gaaggacgg catacaaac acgcaaacg caaaccgaa gaagcctgt tggcgggga acgtgatga tagcagctc cgcctccgt tgaagaaac aaaatctct cgttcacca atcctcgca acaacactc gtcgcaatc tcaatcgca aacccatca caaccatca gctcgacaa atcatcgcc ggtggagcg cccatatct gggccaaac ctccctctt acctgccac aagtacaag tgccatcaa aagcgagcc cgggtacga atacagctg catacagaa ccagccgtc gtatcctta ccaacaaat atttgggtt tcctggttc ggccaacag cagcgggga ggttgccta ccaccacca acaccacgt tactgccgc cgccaaact aatggcctc gtcttagtc taatggtat ttttatgga ctttgtaag tgctttcaa acaacaatt ttgcttaag tcttataaa tactcaggt cgaaacttc atgaatgac gaaattttt gaaacattg agagtgaaa cgatgagtt acaacagtg ttgagagac aactgaaat cttcttgta tgttcgtga tcactaaaa acttagtga atttattta tgtgatcgt aggaatagt tgtgtattt attgatttt atagaattg tttaaatta ttgtatcca cctagttat tgttataag ccgtcgctt tatttctat tattaattt ataatgctt aaatgtaac aagtattcc aggacaaca acagtattc tggccaaaa ttttattcg actgaacgt ttttcaatt ttttagtgc aatcctgaa tgttatgta ataatatta tttgcttat tagttaaaa tttaaaatt gtcatgtgt ttaaatcat tcaagctca tattgagcc gaactacaa caaaataaa taaataact tcactccct cggtctttt tcgctgtaa atattgact aattacgtg gtttcccgt actaaaagt tttcaaaaa attgtagtt gcactgttc taaaataaa taattgtaa atatgtgcg tctgtttaa tgttaaaaa atggaagtg taaatatta cttttatta ttaaattgt actagtaaa atataataa acatgtgac atacat
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
