General information | |||
TC002562 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007418.3: 23332442..23344389 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs | TC002562 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_09019 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 40.0% (includes death as pupa, adult)
eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 3 (3 dpi)adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC002562 RA
MFKTYLCFV IISSFSYSE CARILGAVF TPSYSHQVA FQPIWKELS LRGHQLTVL TTNPLNDSS LKNLTEIDL SMSYDTMKA YKADEILSS NNDSVAVRI KKYMEALHV IADKQLAHP KVQDLLHNK RNDFDLLMV EAIYPTQMA FSWWFNIPF IGLISLDAP SRIHAAVGN PVHPVLYPD YDLPFDKNL TFGERVIST LFHCAMLLY TKFRLHARE ERTLRKYFG EDVPPINEI QKNMSMLFI NANPIFHNI RPLVPATIQ IGGGIHLHE PKPLPKDIQ EYLDNSSDG FIYFSLGTN VKSAALPPQ IKDAILQTF AELPYNILW KFEDEHIPN KPKNVKIVK WLPQTAVLA HKNIKAFIM QCGLQSMEE AIVYNVPMI GLPFYGDQG NNAKVLESK GLGIRLNTE KLEKNTFSN AILTVISDT KYKDNLKEL AALYSDHPM SGLEKAIWW TEYVIRHKG AKHLRSHII DVPISSFNC DNFRYNNHT
- >TC002562 RA
atgtttaaa acatatctg tgttttgta ataatttca tcatttagt tacagtgag tgtgcaaga attcttggc gccgttttc accccatca tacagtcac caagtggcg tttcaacca atatggaaa gaactttcc ctgcgcggc caccaatta actgtcttg actacaaat ccgctaaac gactcaagc ttgaaaaac ctgaccgaa atcgacctc agcatgtcc tacgacaca atgaaagcg tacaaagcc gatgagatt ttgtcctca aacaacgac agtgtggcc gtacgtata aaaaaatac atggaagcg ttgcacgtt atcgcagat aagcaatta gcgcatcca aaagtgcaa gatttgctg cataataag cgaaacgat ttcgattta ttgatggtg gaggcgatc taccccaca cagatggcg ttttcctgg tggtttaat atcccgttt attggatta atttccctg gatgcgcct tcccggatt catgcggct gtgggtaat ccagtgcat ccagttttg tacccggat tatgatctg ccgtttgat aaaaacttg acttttggg gaaagagtg atcagtact ttgtttcac tgcgctatg ttgctctac acgaaattt cgactgcat gcaagggag gaaagaacg ctaaggaag tattttggt gaagatgta ccgccgatt aatgaaata cagaaaaat atgagcatg ttgtttatc aatgccaat cctattttt cacaatatc aggcctttg gtgccagct accatccaa attgggggt ggtattcac ttgcatgaa ccaaagcct ctcccaaaa gacattcaa gaataccta gacaactcc agcgacgga tttatctac tttagcctt ggcacaaac gtaaaaagc gcagccctt ccaccacaa atcaaagac gcaattctc caaaccttt gccgaactc ccctacaac atcctctgg aaatttgaa gacgaacac atccccaac aaacccaaa aacgtgaaa attgtaaag tggctgccg caaaccgct gttttagca cacaaaaat atcaaggcg tttattatg cagtgtgga ctgcaatcg atggaagag gcgattgtc tacaacgtt ccgatgatc ggcttacct ttttacggg gaccaagga aacaatgcg aaagttcta gagagcaaa ggtctcggt atcagactg aatacggag aagttggaa aaaaacacg ttttcgaat gcgatttta acagttatt tcggataca aagtataaa gacaatttg aaagaactt gccgcgctt tacagcgac catccaatg tcaggtcta gaaaaagca atctggtgg actgaatat gtaattaga cacaaaggc gccaaacac ttgagatct cacattatt gacgtaccg atcagcagt tttaactgc gataatttt cgttataac aatcacact taa
- >TC002562 RA
catttaacg tttcattaa aaacatttc gctaaatct ctcttatta tttgacaat tggtaaatt aatgataaa ccttatcaa taaggtgaa aaaccactt ttacacaca cctgattac tctttcggc aaccatgtt taaaacata tctgtgttt tgtaataat ttcatcatt tagttacag tgagtgtgc aagaattct tggcgccgt tttcacccc atcatacag tcaccaagt ggcgtttca accaatatg gaaagaact ttccctgcg cggccacca attaactgt cttgactac aaatccgct aaacgactc aagcttgaa aaacctgac cgaaatcga cctcagcat gtcctacga cacaatgaa agcgtacaa agccgatga gattttgtc ctcaaacaa cgacagtgt ggccgtacg tataaaaaa atacatgga agcgttgca cgttatcgc agataagca attagcgca tccaaaagt gcaagattt gctgcataa taagcgaaa cgatttcga tttattgat ggtggaggc gatctaccc cacacagat ggcgttttc ctggtggtt taatatccc gtttattgg attaatttc cctggatgc gccttcccg gattcatgc ggctgtggg taatccagt gcatccagt tttgtaccc ggattatga tctgccgtt tgataaaaa cttgacttt tggggaaag agtgatcag tactttgtt tcactgcgc tatgttgct ctacacgaa atttcgact gcatgcaag ggaggaaag aacgctaag gaagtattt tggtgaaga tgtaccgcc gattaatga aatacagaa aaatatgag catgttgtt tatcaatgc caatcctat ttttcacaa tatcaggcc tttggtgcc agctaccat ccaaattgg gggtggtat tcacttgca tgaaccaaa gcctctccc aaaagacat tcaagaata cctagacaa ctccagcga cggatttat ctactttag ccttggcac aaacgtaaa aagcgcagc ccttccacc acaaatcaa agacgcaat tctccaaac ctttgccga actccccta caacatcct ctggaaatt tgaagacga acacatccc caacaaacc caaaaacgt gaaaattgt aaagtggct gccgcaaac cgctgtttt agcacacaa aaatatcaa ggcgtttat tatgcagtg tggactgca atcgatgga agaggcgat tgtctacaa cgttccgat gatcggctt accttttta cggggacca aggaaacaa tgcgaaagt tctagagag caaaggtct cggtatcag actgaatac ggagaagtt ggaaaaaaa cacgttttc gaatgcgat tttaacagt tatttcgga tacaaagta taaagacaa tttgaaaga acttgccgc gctttacag cgaccatcc aatgtcagg tctagaaaa agcaatctg gtggactga atatgtaat tagacacaa aggcgccaa acacttgag atctcacat tattgacgt accgatcag cagttttaa ctgcgataa ttttcgtta taacaatca cacttaaat tcattttca ggagggttt ttagaagga attccaaa
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
