Status
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Gene information
General information
TC011637 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007424.3: 15817693..15821732
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    		TC011637
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes

    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
    {{ goGene }}
    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
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    Email
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    Publish name
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_08956

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 30.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)
    Days post injection

    adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
    Days post injection

    Adult morphology
    abdominal odoriferous glands content fragmented - Number of animals showing the phenotype: 5 (13 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC011637 RA
      MPIFALQRS YKYMMYATK QPSLRINQA DLKCKNGCG 
YYGNADWDG YCSKCYRNH MDQERQRKA RQSHSDQTK 
VSGFSKFEE KKRQQTDKK NKYLKSLPV FRKTSSAKD 
SGRPERHLD LRQANPDAD KLTAEFISL YGVWGEQVR 
RDFFKCVQS FTTKIYSEL ENKPIEDIA EMAQKYYNL 
YSNRVNNTE TYQEVTTDV RDELLDFFE KYVMVSLYS 
WLFCPPSTN DEEKDLIIQ ERIRKLSWV NAHHLDCCI 
SETSIEVRD LVYTAITHL LGMDSMKAP QDKLSCVVS 
CCQSVVKVL QHCQGGPVS ADEFLPALI FIVLKANPA 
RLKSNILYV TRFCNDSRL MQGEAGYYF TNLCCAVSF 
IENLTAESL NMPQQEFEA YMNGEITSV SAWESALVA 
CEGMHQLCE HLSLLKDLS IRTNTVQDE TKKLTDDIL 
KFKEEMNEK VNSVLERTP LIIKPRKTP ELSEKVDDT 
QNSQNFYLQ NLQIATSNI DDAKTKLQL DITPCVSKT 
SPTDDHSLS KINYDIDFS DLSGESSLA ELTPEKRKS 
PSFTPDPFS PVGSSCPIT QAPLIPTKP DDFVLPFVE 
TQETLLEKE DEGPNLPSP IKPMTAQYS GFSKQGWQI 
PSIPCITGE LGANASQAN SQTSQDKEN
    CDS sequence
    • >TC011637 RA
      atgccgata tttgccttg cagcgttct tacaagtac 
atgatgtac gccaccaaa caaccctct ttaaggatc 
aatcaagcc gatctcaag tgcaaaaat gggtgcgga 
tactatgga aacgccgat tgggacggt tactgttca 
aaatgctac cgcaaccac atggaccag gagcgccaa 
cgaaaggcg cgccaaagt cactccgac caaaccaaa 
gtctctggt ttttcgaaa ttcgaagaa aagaagcgc 
caacaaacc gacaagaag aacaaatat ttgaaaagt 
ttgcccgtt tttcgcaaa acttcaagc gctaaagat 
tcgggtcgt ccggagcgt catttggat ttgagacaa 
gcgaatcca gatgctgat aaattgacg gctgaattt 
atttcgctc tatggggtt tggggtgaa caagtccga 
agggacttt ttcaagtgt gttcagtcg ttcacaacg 
aagatctac agcgagttg gagaataaa ccgatcgag 
gatattgcc gaaatggcg cagaaatat tacaatttg 
tacagtaat cgggtcaat aatacggag acgtatcag 
gaagttaca acagacgtt cgggatgag ttgttggat 
tttttcgaa aagtacgtc atggtcagt ctttacagt 
tggctgttt tgcccaccg agcaccaac gacgaagag 
aaagacttg ataatacaa gaacgcata cgcaagctt 
agttgggtc aacgcacat catttagac tgttgcatt 
agcgaaact agtatagaa gttagggat ttagtttac 
acagccatc acacattta ctcggaatg gattcaatg 
aaagcacca caagacaag ctgtcttgt gttgtttcc 
tgttgtcag agtgtcgtc aaagttttg caacattgt 
caaggaggt ccagttagt gccgatgaa tttttacca 
gctctcatt ttcatcgtc ttgaaagcg aatccggca 
cgactgaaa agtaacatt ctttacgta acgcgtttt 
tgcaacgac agtcgatta atgcaaggg gaagccggt 
tattatttc actaatttg tgctgcgcc gtttcgttt 
attgaaaat ttgaccgct gagtcgtta aatatgcct 
cagcaagag ttcgaggct tacatgaac ggagagata 
acatcggta agtgcctgg gaatcggca cttgtggca 
tgcgaaggc atgcaccag ctgtgcgaa cacttgtct 
ctccttaaa gacttgtcg attcgcacg aacacggtt 
caagacgaa acgaaaaaa ctaactgac gatatttta 
aaattcaaa gaggagatg aacgagaaa gttaattcg 
gttctggag cgcactcca cttatcatc aagccgcgt 
aaaacccca gaacttagt gaaaaggtt gacgacact 
caaaacagt caaaatttc tatttgcaa aatctccaa 
atcgccaca agtaacatc gacgatgcc aaaactaaa 
ttacaacta gacatcaca ccgtgcgtt agtaaaaca 
tcgccgact gacgatcac agtctctct aaaatcaac 
tacgatatc gatttttcc gacttaagt ggcgagagt 
agtttggct gaattgacc ccagaaaag agaaaatcg 
ccaagtttc acaccggat cccttcagt ccagttggg 
agcagttgc ccgataaca caggctcct ttaataccg 
acaaaaccg gacgatttt gttttaccg ttcgttgaa 
acgcaagaa actctatta gagaaagag gacgaagga 
ccgaattta ccatcgccg attaaacca atgacggca 
caatattcg gggttttcc aaacagggg tggcaaata 
cccagcatt ccgtgcatt acgggggag ctgggcgcc 
aatgcatca caagccaat agtcagacg agtcaggat 
aaggagaat taa
    mRNA sequence
    • >TC011637 RA
      ataaaagat tttttatct catttgaaa aaagtagtt 
tgggcgctt gttatcgca aggttggca gcactgcga 
aggtaaaaa atggcgtgc gtcagctgt tattgattt 
tttgatcaa aacaacaaa cataaaaaa tgaactgtg 
agcgataaa tttggtaaa aaagtcctt attgctgca 
aaacgagtg ataaaacag gcgtgttat caccatcac 
cacaagaaa gatgcaaaa cattttgtt agtgagcga 
ttgacgaaa cttgctaga cggtgagta aacattaat 
taatcatcg ctaaatttg ttgtttatc accgtttga 
aaaaatcat tgacgcgaa tcgtcttca gttatttag 
cacgaaaac tgtgcctcg ctgcgattg gccgtagat 
aaggattct tggtcaaat tagactttt aaccttgtc 
cattcaatt ggttaatcc ttatcgctt gataaactc 
gttccaata aaagactct ccatcatct tgcaacggc 
agttttctc gtcttaatc gagccaagc tgtctcgcg 
tttcacgaa aaaaacaac accgagcgt tcgcccccc 
gtttcctcc ttgcgtttt tccaaccag caccctgtc 
gttaacaaa ttcaccccc ttgacaaac cctccacaa 
atggctgat cctggtgaa agtttaata agtgccttc 
atcgaatcc ctaacgagg attcacatc gttgaaaca 
gcgggcatc aactttcta aaattcccc caattccca 
gtcgtccaa atgctaatg aaagagttg aatttgtgt 
gcacacgat cacagcttc gtaccaccg tggtaaaat 
aatcaaaaa ctaaaaacg agtgccttt tatcgtcac 
tcaacgagt gaaaaatcc acaacagat gggcgattg 
agaaattca caaagaacg gactcataa actattttc 
tttagttct taagtagtg ttattagtg gggtgaaaa 
tgccgatat ttgccttgc agcgttctt acaagtaca 
tgatgtacg ccaccaaac aaccctctt taaggatca 
atcaagccg atctcaagt gcaaaaatg ggtgcggat 
actatggaa acgccgatt gggacggtt actgttcaa 
aatgctacc gcaaccaca tggaccagg agcgccaac 
gaaaggcgc gccaaagtc actccgacc aaaccaaag 
tctctggtt tttcgaaat tcgaagaaa agaagcgcc 
aacaaaccg acaagaaga acaaatatt tgaaaagtt 
tgcccgttt ttcgcaaaa cttcaagcg ctaaagatt 
cgggtcgtc cggagcgtc atttggatt tgagacaag 
cgaatccag atgctgata aattgacgg ctgaattta 
tttcgctct atggggttt ggggtgaac aagtccgaa 
gggactttt tcaagtgtg ttcagtcgt tcacaacga 
agatctaca gcgagttgg agaataaac cgatcgagg 
atattgccg aaatggcgc agaaatatt acaatttgt 
acagtaatc gggtcaata atacggaga cgtatcagg 
aagttacaa cagacgttc gggatgagt tgttggatt 
ttttcgaaa agtacgtca tggtcagtc tttacagtt 
ggctgtttt gcccaccga gcaccaacg acgaagaga 
aagacttga taatacaag aacgcatac gcaagctta 
gttgggtca acgcacatc atttagact gttgcatta 
gcgaaacta gtatagaag ttagggatt tagtttaca 
cagccatca cacatttac tcggaatgg attcaatga 
aagcaccac aagacaagc tgtcttgtg ttgtttcct 
gttgtcaga gtgtcgtca aagttttgc aacattgtc 
aaggaggtc cagttagtg ccgatgaat ttttaccag 
ctctcattt tcatcgtct tgaaagcga atccggcac 
gactgaaaa gtaacattc tttacgtaa cgcgttttt 
gcaacgaca gtcgattaa tgcaagggg aagccggtt 
attatttca ctaatttgt gctgcgccg tttcgttta 
ttgaaaatt tgaccgctg agtcgttaa atatgcctc 
agcaagagt tcgaggctt acatgaacg gagagataa 
catcggtaa gtgcctggg aatcggcac ttgtggcat 
gcgaaggca tgcaccagc tgtgcgaac acttgtctc 
tccttaaag acttgtcga ttcgcacga acacggttc 
aagacgaaa cgaaaaaac taactgacg atattttaa 
aattcaaag aggagatga acgagaaag ttaattcgg 
ttctggagc gcactccac ttatcatca agccgcgta 
aaaccccag aacttagtg aaaaggttg acgacactc 
aaaacagtc aaaatttct atttgcaaa atctccaaa 
tcgccacaa gtaacatcg acgatgcca aaactaaat 
tacaactag acatcacac cgtgcgtta gtaaaacat 
cgccgactg acgatcaca gtctctcta aaatcaact 
acgatatcg atttttccg acttaagtg gcgagagta 
gtttggctg aattgaccc cagaaaaga gaaaatcgc 
caagtttca caccggatc ccttcagtc cagttggga 
gcagttgcc cgataacac aggctcctt taataccga 
caaaaccgg acgattttg ttttaccgt tcgttgaaa 
cgcaagaaa ctctattag agaaagagg acgaaggac 
cgaatttac catcgccga ttaaaccaa tgacggcac 
aatattcgg ggttttcca aacaggggt ggcaaatac 
ccagcattc cgtgcatta cgggggagc tgggcgcca 
atgcatcac aagccaata gtcagacga gtcaggata 
aggagaatt aactgtatc aatgtttta aatatattt 
tattcccaa tt
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