General information | |||
TC008758 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007422.5: 9593647..9596822 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC008758 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_08800 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)
adult lethality - Number of animals showing the phenotype: 1 (9 dpi)Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC008758 RA
MTTQAEQLN NKRLNLEKA TNFMRQYRD PHSRELKKL SANQFMEVW SHYDKDGNG YIEGTELDG FLREFVSSA NATDVGPEA VSDDMLVEL KACFMEAYD DNQDGKIDI RELAQLLPM EENFLLLFR FDNPLESSV EFMKIWREY DTDGSGYIE ADELKNFLR DLLKEAKKI NDVSEDKLI EYTDTMLQV FDANKDGRL QLSEMAKLL PVKENFLCR QIFKGATKL TKDDIERVF ALYDRDNNG TIENEELRG FLKDLLELV KKDYDAQDL LDFEETILR GVDYNQDGK INKKELTMI LLAIAKHNQ EEESTA
- >TC008758 RA
atgacgacc caagcggag cagctcaac aataaacgt ctcaacttg gaaaaagca acaaacttc atgaggcaa tatcgcgac ccccattcc cgcgaactg aaaaaactt tcggcgaat cagttcatg gaagtctgg agtcactac gacaaagac gggaatgga tatatcgag ggaacggaa ctggacggc tttttgagg gagttcgtg tcaagtgcc aatgccacg gatgtcggg ccggaagcg gtctccgac gacatgttg gtggagctg aaagcgtgc ttcatggag gcttacgat gacaaccag gatggaaaa atcgatatt cgtgagttg gcgcagtta cttccgatg gaagaaaac ttcttactc cttttccga ttcgacaat cccttagag tccagtgtg gagtttatg aagatttgg cgcgagtac gacaccgat ggtagcggt tacatcgaa gccgacgag ctcaaaaat ttcctgcga gacttgctg aaagaagcg aaaaagatt aacgacgtt tccgaagat aaactcatc gaatacacc gacaccatg ctccaggtg tttgacgcc aacaaggac ggccgtttg caactgtcg gaaatggcc aagttactt cctgttaaa gaaaatttt ctctgcagg caaatcttc aagggggct acaaaactc accaaggac gatatcgag cgagttttt gccttgtac gacagggat aacaacggt acaatagaa aacgaagag ttgcgcggc tttttgaaa gatttgctc gaactggtc aaaaaagac tacgatgct caagatttg ctcgatttt gaggaaacc attctacga ggcgtggac tacaatcaa gatggcaaa atcaacaag aaggaattg acgatgatc ttgttagcc atcgcgaaa cataatcaa gaggaggaa tcaaccgca tag
- >TC008758 RA
gttgcagat tcgcggaga tgacgaccc aagcggagc agctcaaca ataaacgtc tcaacttgg aaaaagcaa caaacttca tgaggcaat atcgcgacc cccattccc gcgaactga aaaaacttt cggcgaatc agttcatgg aagtctgga gtcactacg acaaagacg ggaatggat atatcgagg gaacggaac tggacggct ttttgaggg agttcgtgt caagtgcca atgccacgg atgtcgggc cggaagcgg tctccgacg acatgttgg tggagctga aagcgtgct tcatggagg cttacgatg acaaccagg atggaaaaa tcgatattc gtgagttgg cgcagttac ttccgatgg aagaaaact tcttactcc ttttccgat tcgacaatc ccttagagt ccagtgtgg agtttatga agatttggc gcgagtacg acaccgatg gtagcggtt acatcgaag ccgacgagc tcaaaaatt tcctgcgag acttgctga aagaagcga aaaagatta acgacgttt ccgaagata aactcatcg aatacaccg acaccatgc tccaggtgt ttgacgcca acaaggacg gccgtttgc aactgtcgg aaatggcca agttacttc ctgttaaag aaaattttc tctgcaggc aaatcttca agggggcta caaaactca ccaaggacg atatcgagc gagtttttg ccttgtacg acagggata acaacggta caatagaaa acgaagagt tgcgcggct ttttgaaag atttgctcg aactggtca aaaaagact acgatgctc aagatttgc tcgattttg aggaaacca ttctacgag gcgtggact acaatcaag atggcaaaa tcaacaaga aggaattga cgatgatct tgttagcca tcgcgaaac ataatcaag aggaggaat caaccgcat agatatcat gaggaagga aatcgtaac gagttgcca atttatcaa gtagcacaa gtttcagga gtttataag taattatat atagggtta aatttaatg ttagattat tgtgacacc aatattgtt gttgatttg gtagcgtga ctacaataa ggtaaaaac gtgcatcaa tctctcaat tataatcat ttttacgat caattttcg catcgctgt gattttatt ggaagtact cgtaagtag agggcaaca cggttgata tttttataa tgcaatagc cttgagatc agattaagt tactttcag ttgatattc caaatgagg gagaagaaa caccaatcc aaaccaaag acttatttg atacaaaac ccaatccta agaatgcac aactttcat atcgcactt caatcaact gttactgaa ttatactta gactagtca tgcatgatc tctgagctt tcggtactc aaatatttc aaagtttac aagtagtga tgttgctct atttatcta taactatat aactatatt tataaacgc tgctacggc actgtatta tcgattgtg atacctttc attgaacga aatgaaaga cttgggaga atcgaattt tattgattg gtctcgaag cctaagtag atgaaaacg tggtacatt atcaaaccg cagcttcga atattatta tcttgaaaa ttcgtccag tttcgcata tctgtgccc ctctatgtg cattattgt ataataaag tctatttta ataaaaagt atagattaa tttatatat gttaacact tttatattt attacgtta tgtacaaag ttgccaaat tctcttaga cgtgtgaaa tacttacag ttataatac tataaggcg atttttgct tgtttttcg ttcaattca gtgtgataa aacattttc aaactacta cgaaaacgg ttcactatg tcctactat actgtaaaa aataaatgt tcgttattt aa
