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Gene information
General information
TC015914 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007422.5: 4143510..4145150
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC015914
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes


    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
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    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
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    Name
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    Email
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    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_08684

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 80.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 4 (3 dpi)
    Days post injection


    adult lethality immediately after eclosion - Number of animals showing the phenotype: 1 (3 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 2 (11 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    1

    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC015914 RA
      MLPLSHKDN LHRGFGSRI KEKLNGWMR LIFSDRNSR 
      NLFLFLLLN LSFAFVELV YGVWSNSLG LISDSFHMF 
      FDCTGLLAG LAASVITKW KANEKYSYG YVRAEVLAG 
      FVNGLFLLF ISFFIMSEA VERAIEPPE VKHERLFLV 
      SVLGLLVNL VGIYAFQHG HGHSHGGGG HGHSHGHNH 
      NSHGHSHDH TLDIDIAAS GNSQIMKGV FLHILADTL 
      GSVGVIISA VLMQMFGWM IADPICSMF IAILIALSV 
      LALIKDSVV ILMQRQPYA LDNVLPQCY QKVVSLPGV 
      YSVQEPHFW TLCSEVYVG ALKLEVSKN VDPKYVVSH 
      TQMIFASVG VRQIYVQLD YTPM
    CDS sequence
    • >TC015914 RA
      atgttgcca ctgtcgcac aaggataat ttgcaccgg 
      ggcttcggg tcccgaatt aaggagaag ttgaacggg 
      tggatgagg ttaattttt tccgacagg aactcccgc 
      aatttgttt ctgttcctg cttctgaac ctctcgttt 
      gcgtttgta gagttagtt tatggtgta tggtctaat 
      agcttaggt ttaatatcc gattccttc catatgttt 
      ttcgactgt actggctta ttagccggc ttggccgcg 
      tccgtaatc acgaaatgg aaagccaac gagaaatat 
      tcgtacggt tacgtccgt gctgaggtt ttggccggt 
      tttgttaat gggttgttt ttgcttttt atctcgttt 
      tttatcatg tcggaagct gtagagcgt gcaatagag 
      ccccctgag gtgaaacac gagaggttg tttctggtc 
      tcagtgctg ggcctttta gtcaatttg gtgggaatt 
      tacgccttc cagcacggc catgggcac tcccacggt 
      ggtggcggc cacggtcac tcccatggg cacaaccac 
      aactcccat ggtcactcc cacgaccac actctggac 
      atagatata gcagcaagt ggtaattcg caaataatg 
      aaaggagtg ttcctccac atcctggcc gacactttg 
      ggaagtgtt ggtgtaata atttcggca gtgttaatg 
      caaatgttc ggttggatg attgctgat ccaatttgt 
      tcgatgttt attgcgatt ttaatagcg ttaagtgtg 
      ctagcgttg attaaagat tccgttgtt attttaatg 
      cagagacag ccgtatgca cttgataat gttttgccg 
      cagtgttac cagaaagtg gtcagtttg ccaggcgtt 
      tattcggtg caagagccc catttttgg accctttgt 
      agtgaggtt tacgtgggg gcgcttaaa ttggaagta 
      tcaaaaaat gttgatcct aaatatgtc gtgtcgcac 
      acgcaaatg atttttgcg tcggtgggg gttaggcag 
      atttatgtg caacttgac tatactcca atgtga
    mRNA sequence
    • >TC015914 RA
      taaaaaaac ttgtaaaga aattggttg gtcaagctg 
      ggaaactga cagttgcca aaattttga cagtagttc 
      cgacttttt gagtatatt ttgcatttt tttgccaaa 
      aatcctaat ttaaatagt gtacgtgtc acactagct 
      gataaaatg agcgaatta tgattacct gaagtcggg 
      ttgaagcaa aatcaagtg taatggcaa aattcaagt 
      tgggtgaaa cacgtatgc aattttatc aaaaaatct 
      gataatgac cggtctctg cctgtgaat atcggcctt 
      ccgtgacga aatcatcat gttgccact gtcgcacaa 
      ggataattt gcaccgggg cttcgggtc ccgaattaa 
      ggagaagtt gaacgggtg gatgaggtt aattttttc 
      cgacaggaa ctcccgcaa tttgtttct gttcctgct 
      tctgaacct ctcgtttgc gtttgtaga gttagttta 
      tggtgtatg gtctaatag cttaggttt aatatccga 
      ttccttcca tatgttttt cgactgtac tggcttatt 
      agccggctt ggccgcgtc cgtaatcac gaaatggaa 
      agccaacga gaaatattc gtacggtta cgtccgtgc 
      tgaggtttt ggccggttt tgttaatgg gttgttttt 
      gctttttat ctcgttttt tatcatgtc ggaagctgt 
      agagcgtgc aatagagcc ccctgaggt gaaacacga 
      gaggttgtt tctggtctc agtgctggg ccttttagt 
      caatttggt gggaattta cgccttcca gcacggcca 
      tgggcactc ccacggtgg tggcggcca cggtcactc 
      ccatgggca caaccacaa ctcccatgg tcactccca 
      cgaccacac tctggacat agatatagc agcaagtgg 
      taattcgca aataatgaa aggagtgtt cctccacat 
      cctggccga cactttggg aagtgttgg tgtaataat 
      ttcggcagt gttaatgca aatgttcgg ttggatgat 
      tgctgatcc aatttgttc gatgtttat tgcgatttt 
      aatagcgtt aagtgtgct agcgttgat taaagattc 
      cgttgttat tttaatgca gagacagcc gtatgcact 
      tgataatgt tttgccgca gtgttacca gaaagtggt 
      cagtttgcc aggcgttta ttcggtgca agagcccca 
      tttttggac cctttgtag tgaggttta cgtgggggc 
      gcttaaatt ggaagtatc aaaaaatgt tgatcctaa 
      atatgtcgt gtcgcacac gcaaatgat ttttgcgtc 
      ggtgggggt taggcagat ttatgtgca acttgacta 
      tactccaat gtgattttt tagcttaaa aaacattcc 
      ttcctgacc cgacatttt ttgatacaa attcgcatt 
      ttgttattt attcgaggc attttctag tattgataa 
      agcgtttta tgtatacag tgatttatt ttaaaagca 
      aaatataag tgcgccgca gagttttgt tttccttgt 
      cgaccatga aaataaaaa aattacgtc gaa
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY