| General information | |||
| TC009234 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007422.5: 2835421..2840440 | |
| Sequence information | |||
| Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
||
| Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
| Closest fly homologs |
|
TC009234 | |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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| GO ID | * {{ blurIdResult }} |
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* : mandatory fields
Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
| General information | ||||
| iB_08647 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
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Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 40.0% (includes death as pupa, adult)
eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 3 (3 dpi)adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC009234 RA
MASFAAQAA LRAKWSSLV EEHSIEVPP EVTSKVTSV VGWLKQASL EVRAAGRRA VNTLAGGMA HHLVILHFN DVYNVEPRQ GPEPVGGAA RFCTAIKSF QHLHPLVLF SGDAFSPSM LSTYTKGEQ MVPVLNDLG THCAVLGNH DFDHGLEVL SQWVAQTEF PWLMSNVLD NETGRPLGE GRITHVVHW AGHRIGLLG LVEKEWLDT LATINPEMV TFLDFVEAG QKLAAQLKQ EGCDYVIAL THMRTPNDI KLAENCDNI DLILGGHDH VYEIKEING KFVVKSGTD FRQFSKITV NFDKPNGTP EVTIEEINV TSAFPEDPK LKEKLDKYT SIVEGKMHE VLGCFSVPL DGRFTSIRT SESNLGNWV CDVVLAATG ADLVILNSG TFRSDQVHP AGDFTVRDL TNIVPMRDP LVILKLTGK QILEALENG VCMYPKLEG RFPQVAGVS FAFDPSKAP GQRVDPAFV RIGDEYLNL EQNYRLATK SYMHSGCDG YVMLKDAEV LVDEGECPE LGLAIQNHF QAINMRLGK TKKHSKHRQ SLVTLSRRH SLVKMLDGS ELDGPPPLR RASTVEVTT SPPSHHTAR LTRRASLDD LEQESCQLT PKIDHRIVV ITNEEKRQE LILQRQRIE QDSIIEEVD EYSPQN
- >TC009234 RA
atggccagt ttcgcggcg caggccgcc ctccgtgcg aaatggagc tcgctggtg gaggagcac agcatcgag gtgcccccc gaagtcacc agcaaagtg acaagtgtg gtgggctgg ctcaaacag gcttcgctg gaggttcga gcggccggt cgaagggct gtcaatacg ttggccggg ggcatggcg caccatttg gtcattctg cacttcaac gatgtgtac aatgttgag ccgagacag gggccggag cccgtgggg ggcgcagcc cggttttgc acggcgatt aagagtttc cagcacttg catcctctg gtgctgttc agcggggac gctttctcg cccagcatg ttgagcacc tacacgaaa ggtgagcaa atggtcccc gtcctcaac gacctcggc acccactgt gccgtcctc ggcaaccac gatttcgat cacggcctt gaagtgctc tcccaatgg gtggcccaa accgaattc ccttggctc atgtccaac gtactcgat aacgaaacc ggccgtcca ttgggcgaa gggcggatc acccatgtg gtacattgg gcaggccac agaatcggt cttttgggc cttgttgaa aaagaatgg ctggacaca cttgcaacc atcaaccca gaaatggtc acttttctc gatttcgtc gaagcggga caaaaactc gccgcgcaa ttgaaacaa gaggggtgc gattatgtg atcgctctg actcatatg cgaacgcct aacgatatc aagctggcg gaaaattgc gataacatc gatttgata cttgggggg catgaccac gtgtacgaa atcaaggaa atcaacggg aaatttgtg gtgaaaagt ggcaccgac tttcggcag tttagtaaa attacggtg aattttgat aaaccgaat ggtactcct gaagtaaca attgaggaa attaacgtt acttctgcc tttcctgag gatccaaaa ttgaaggaa aaactggat aaatacacg agtattgtg gaggggaaa atgcacgaa gttttgggt tgtttttcc gtgccactt gatggacgt ttcacctcg attcgcact tcggaatcg aacttagga aattgggtc tgcgatgtg gttttggca gcaacaggt gcggattta gtaatttta aattcgggc acttttcgc tcggatcag gtgcaccca gctggggac ttcacagtt cgcgatttg accaacatt gtgcccatg agagacccc ttggtcatc ctcaaatta acaggcaaa caaattttg gaagcgctg gaaaatggg gtgtgtatg tacccgaaa ttggagggg aggttcccg caagtggcg ggggtgagt tttgccttc gacccctcc aaggcacca ggacaacga gtcgaccct gcctttgtc cgaatcgga gacgagtat ttgaatttg gagcagaat tatcggctt gcgaccaag agttacatg cattcaggg tgtgatggt tacgttatg cttaaagat gccgaagtt ttggtggac gaaggcgag tgtcccgag ttgggtcta gcgatacaa aaccatttc caagcgatt aatatgcgc ttgggcaaa actaaaaaa cactccaag catcgacaa tcattagtc accctttca cgaaggcat agtttggtg aaaatgctt gatgggagt gaattagac ggccctcct cccctacgg cgggccagc actgtggag gtgaccacc agccccccg tcccaccac accgccaga ctgacccga agggcgtct ttggatgac cttgagcag gaatcgtgt caattaact ccgaaaata gaccatcga attgtcgtc ataacaaac gaggagaaa cgccaggaa ttgattctt cagagacag agaatcgag caggactcg atcattgaa gaagtcgac gaatattca ccgcagaat taa
- >TC009234 RA
tggcacagg cgcactcct cttgacatt tccccaaat gtcaacaga tgtcacaca catcctgcg gacaaattt aaccgttcg tccttcact ccggccttt tgcaaggat gttaaatat ttaatcagt gccgagttt cctcactat tccatgact taaccacct ctaaactcg caaaatgga atcaacgac caaaaccct aaaccaatc gatgcctcg cttataata accctcgtg agtacctcc acctcggag cccccacta atccggtgt gtggtatgt tctaacaag ggggctatc atggccagt ttcgcggcg caggccgcc ctccgtgcg aaatggagc tcgctggtg gaggagcac agcatcgag gtgcccccc gaagtcacc agcaaagtg acaagtgtg gtgggctgg ctcaaacag gcttcgctg gaggttcga gcggccggt cgaagggct gtcaatacg ttggccggg ggcatggcg caccatttg gtcattctg cacttcaac gatgtgtac aatgttgag ccgagacag gggccggag cccgtgggg ggcgcagcc cggttttgc acggcgatt aagagtttc cagcacttg catcctctg gtgctgttc agcggggac gctttctcg cccagcatg ttgagcacc tacacgaaa ggtgagcaa atggtcccc gtcctcaac gacctcggc acccactgt gccgtcctc ggcaaccac gatttcgat cacggcctt gaagtgctc tcccaatgg gtggcccaa accgaattc ccttggctc atgtccaac gtactcgat aacgaaacc ggccgtcca ttgggcgaa gggcggatc acccatgtg gtacattgg gcaggccac agaatcggt cttttgggc cttgttgaa aaagaatgg ctggacaca cttgcaacc atcaaccca gaaatggtc acttttctc gatttcgtc gaagcggga caaaaactc gccgcgcaa ttgaaacaa gaggggtgc gattatgtg atcgctctg actcatatg cgaacgcct aacgatatc aagctggcg gaaaattgc gataacatc gatttgata cttgggggg catgaccac gtgtacgaa atcaaggaa atcaacggg aaatttgtg gtgaaaagt ggcaccgac tttcggcag tttagtaaa attacggtg aattttgat aaaccgaat ggtactcct gaagtaaca attgaggaa attaacgtt acttctgcc tttcctgag gatccaaaa ttgaaggaa aaactggat aaatacacg agtattgtg gaggggaaa atgcacgaa gttttgggt tgtttttcc gtgccactt gatggacgt ttcacctcg attcgcact tcggaatcg aacttagga aattgggtc tgcgatgtg gttttggca gcaacaggt gcggattta gtaatttta aattcgggc acttttcgc tcggatcag gtgcaccca gctggggac ttcacagtt cgcgatttg accaacatt gtgcccatg agagacccc ttggtcatc ctcaaatta acaggcaaa caaattttg gaagcgctg gaaaatggg gtgtgtatg tacccgaaa ttggagggg aggttcccg caagtggcg ggggtgagt tttgccttc gacccctcc aaggcacca ggacaacga gtcgaccct gcctttgtc cgaatcgga gacgagtat ttgaatttg gagcagaat tatcggctt gcgaccaag agttacatg cattcaggg tgtgatggt tacgttatg cttaaagat gccgaagtt ttggtggac gaaggcgag tgtcccgag ttgggtcta gcgatacaa aaccatttc caagcgatt aatatgcgc ttgggcaaa actaaaaaa cactccaag catcgacaa tcattagtc accctttca cgaaggcat agtttggtg aaaatgctt gatgggagt gaattagac ggccctcct cccctacgg cgggccagc actgtggag gtgaccacc agccccccg tcccaccac accgccaga ctgacccga agggcgtct ttggatgac cttgagcag gaatcgtgt caattaact ccgaaaata gaccatcga attgtcgtc ataacaaac gaggagaaa cgccaggaa ttgattctt cagagacag agaatcgag caggactcg atcattgaa gaagtcgac gaatattca ccgcagaat taattgttt tttttagta gaatttatt tagagtaga actcgggta atgccttca aagaacacc acttcaaag cattccaca acgagttgg ttgtgaata gaatttttt tgagttacc gtttaatca aaatttgta tcaaaagca gcaataact aaattctgt gattggcaa gcgtttcat ttcgtgttt acttatttg tgcctaaaa cggtcgcaa ctttccact aaaactagt acaaatttt attagatgt gctgttgtg gtgggcaac ttaatctcg atgcctttg cgcacggcc tccttgatg cacagcaaa ctgtcagtt tggcagttc aatttgtcg tcaaggggg ctgcgcctg tctgtatat ttcttccga tattaatgt gagcaccgt cagtgttaa gcttgtcac tgctagtgt atataatgc actttttcg aatatttag ccgtcattc aatccgtca cttggtatc agacagcgc catctagcg actcactta gaccaaacc ccaccttaa gcgtctgat accgattct cgtcaattg tgctaatta gtgtgaaag atttcactg tgcttcggt ggtaaatgt attgcgaaa cttcagcta gtcacaaaa acacctgtt ataaaacac ttagattgt tacgaaatt tatttgtgt tgattttta cagttatag gtggctgaa tgtagatct gaataaata attttttta aac
