General information | |||
TC015653 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007421.3: 4179504..4199966 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC015653 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_08539 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 40.0% (includes death as pupa, adult)
eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 3 (3 dpi)adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): 30% - 50%
remarks: muscle pattern potentially obscured by segmentation defect,
larva completeeverted (inside-out) - Penetrance (percentage of animals/eggs on slide): 30% - 50%
larva partiallyeverted (inside-out) - Penetrance (percentage of animals/eggs on slide): 30% - 50%
larva dorsalbent - Penetrance (percentage of animals/eggs on slide): 30% - 50%
larva circumference decreased - Penetrance (percentage of animals/eggs on slide): 50% - 80%
Comment: the not everted part as well as the "bent" larvae |
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC015653 RA
MRRNALGRS PSQCLLCGD GFGMLGAQK VLCIDCRRL VCQKCAIET YTKAARNYW LCMICAETR EIWKKSGAW FFKSIPKYI LPAEKNQNY RHSLGKIGR NSKGNYRDE DSSSDEERK IWTRIQRRN SSTESTHDG HESVQDVAT MSTHKRQSS ASESQQSKE MESLKGLGS LNLSETKVW DQAEGSELS RRESTVSRS LSEWNWSDS RSEDRVSPS TSSVSSSIF KSNLEEHKP SDHSLGTIE LSLTYDPIT STLHCTVYR AKNLIPMDI NGLSDPFCK LNILPNAKP STRLRTKTV HKTRNPEFN ENLTFYDIS ESDLSKKAL HVLVVDDDK FGHDYMGET RIGLAKLKQ QNTIYVAAS LEEMRHEQK GPLPAPELN QWFDDLWSR GQILLSLCY STKRRALLV MVCRCANLL PMDNNGFSD PFVKLQLRP DPCHRKHKT SIKWKNLNP VYNEEFAFE TRPTELATQ SLYITVYDK DYGKSNDYL GGLILGGTG SKGLRLKQW LDMIRYPDH RHEAWHNLT EEILD
- >TC015653 RA
atgcgtcgc aacgccctg gggcgcagc ccctctcag tgtctcctc tgcggcgat ggttttgga atgttgggg gcccagaaa gtgctctgt atcgactgt cgccgtcta gtgtgccaa aaatgtgcc attgaaacg tatactaaa gcagcacgt aactattgg ttgtgtatg atttgtgcc gaaacgcgc gaaatttgg aaaaaatca ggcgcttgg tttttcaaa agcatcccc aaatatata cttccggcg gaaaaaaac caaaattac agacacagt ctggggaaa attggtcga aattcgaag gggaattac cgggatgaa gacagctcg tcggatgag gagaggaaa atttggacg aggatacag aggaggaat tctagtacg gaaagcact catgatggc cacgagtcc gtccaagac gtcgccacg atgtcgaca cacaagaga caatccagc gctagcgag tcgcaacaa agcaaagag atggaatca ttaaaaggc ttaggttcg ctgaattta agcgaaacg aaggtttgg gatcaggct gagggatcc gagctatcc cggagggaa tccacagtt agcagatcc ttatcagag tggaattgg agcgacagc aggagcgag gatcgagtt tcgccgagt acttcaagt gtgagcagc agcatattt aaaagcaac ctggaggag cacaaaccc tccgaccac tccctcggc accatcgag ctctccctc acctacgac cccatcacc tccaccctc cattgcacc gtctaccgt gccaaaaac ctcatcccc atggacatc aacggcctc tcggacccc ttctgcaaa ctgaacatc ctccccaac gccaagccc tcgacccgc ctccgcacc aagaccgtc cacaaaaca cgcaatccc gaattcaac gaaaaccta actttctac gacatctcc gagagcgac ctctcgaag aaggccctc cacgtcctg gtggtggac gacgataag ttcggacac gactacatg ggcgagacc aggatcgga ctggccaaa ctcaaacaa caaaacacc atctacgtg gccgcctct ctggaggag atgcgacac gagcaaaag gggccactc ccagcaccc gaattgaac caatggttc gacgatttg tggtcacgt ggacaaatc ctcctatcg ctgtgctac agcaccaag aggagggcg ttgctggtg atggtgtgc aggtgtgcc aacttactg ccaatggac aataacggg ttctccgac ccgtttgtt aaactgcaa ttacgacca gatccttgc caccgcaag cacaagact tccattaaa tggaaaaat cttaacccg gtttataac gaggagttt gcgtttgag acacgtccc acagagttg gccacgcaa agtctctat atcacagtc tatgataag gactatggc aaaagtaac gattatttg gggggtttg atcctagga ggcaccgga tcgaaggga ctgaggttg aaacaatgg ttggatatg attagatat ccggatcat agacatgaa gcctggcat aacttaacc gaagaaatt ctagattga
- >TC015653 RA
ctcaagcaa cgaccaacg tgatttatt tcacccttt ttgtccatg gtaaacaat ggtcgattg tggagccaa cgatgctac caacagatt tgtttgtcc caatgatcg gcaattggc gcttcgagc caagttggg cgtctggtc gagcgtctg gaaaacatg cgtcgcaac gccctgggg cgcagcccc tctcagtgt ctcctctgc ggcgatggt tttggaatg ttgggggcc cagaaagtg ctctgtatc gactgtcgc cgtctagtg tgccaaaaa tgtgccatt gaaacgtat actaaagca gcacgtaac tattggttg tgtatgatt tgtgccgaa acgcgcgaa atttggaaa aaatcaggc gcttggttt ttcaaaagc atccccaaa tatatactt ccggcggaa aaaaaccaa aattacaga cacagtctg gggaaaatt ggtcgaaat tcgaagggg aattaccgg gatgaagac agctcgtcg gatgaggag aggaaaatt tggacgagg atacagagg aggaattct agtacggaa agcactcat gatggccac gagtccgtc caagacgtc gccacgatg tcgacacac aagagacaa tccagcgct agcgagtcg caacaaagc aaagagatg gaatcatta aaaggctta ggttcgctg aatttaagc gaaacgaag gtttgggat caggctgag ggatccgag ctatcccgg agggaatcc acagttagc agatcctta tcagagtgg aattggagc gacagcagg agcgaggat cgagtttcg ccgagtact tcaagtgtg agcagcagc atatttaaa agcaacctg gaggagcac aaaccctcc gaccactcc ctcggcacc atcgagctc tccctcacc tacgacccc atcacctcc accctccat tgcaccgtc taccgtgcc aaaaacctc atccccatg gacatcaac ggcctctcg gaccccttc tgcaaactg aacatcctc cccaacgcc aagccctcg acccgcctc cgcaccaag accgtccac aaaacacgc aatcccgaa ttcaacgaa aacctaact ttctacgac atctccgag agcgacctc tcgaagaag gccctccac gtcctggtg gtggacgac gataagttc ggacacgac tacatgggc gagaccagg atcggactg gccaaactc aaacaacaa aacaccatc tacgtggcc gcctctctg gaggagatg cgacacgag caaaagggg ccactccca gcacccgaa ttgaaccaa tggttcgac gatttgtgg tcacgtgga caaatcctc ctatcgctg tgctacagc accaagagg agggcgttg ctggtgatg gtgtgcagg tgtgccaac ttactgcca atggacaat aacgggttc tccgacccg tttgttaaa ctgcaatta cgaccagat ccttgccac cgcaagcac aagacttcc attaaatgg aaaaatctt aacccggtt tataacgag gagtttgcg tttgagaca cgtcccaca gagttggcc acgcaaagt ctctatatc acagtctat gataaggac tatggcaaa agtaacgat tatttgggg ggtttgatc ctaggaggc accggatcg aagggactg aggttgaaa caatggttg gatatgatt agatatccg gatcataga catgaagcc tggcataac ttaaccgaa gaaattcta gattgaatt attggacca aattgtaat aaatttaat caaagctt
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
