General information | |||
TC013196 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007420.3: 12439625..12447492 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC013196 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_08383 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)
adult lethality - Number of animals showing the phenotype: 1 (9 dpi)Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC013196 RA
MLRQVWRSH KYLWTELSV SCRMLWWLL LGLCSTSGV ALCPSMCQC GVTSKGRRK VQCVEGGMT EAIPTHEMD AGTEVLEIS APAGDWNAL SISPTFQRF KRLEEVHIR RSGLTQVGM HPFWGVPSL KLLDLTVNN ISGVADHNF RGLVNLVEL NLDDNRITS LQSGVFKHL TELRILTLQ RNLLDELVP RLFLKLGKL HMLKLSGNK FDELNPEVF KDIPELRVL ECRECGLRR INTQIYHLL PYLSHLDLG DNQMQFIAS DEFRDLKRL HSLKLDGNQ LPVVLEHTF VRQQELKYL CLARNRLAK ITNTAFVNL SSLADLDIG YNKLDRLEM QALQPVADT LERLVISGN AFGPNVIRN ILNTVYNVR ELGVAHMNL RHIPKGFFP ERVRKLNVS ANNLTELES GSLPRQLLE LDLSHNDLQ RLSESLILK LEDLHAVSL GSNPWSCRV CDLSSIIFR LNRTNLFRN VTCAAPKPL QGREISALH LEDLPGCKP PSQDAAKTG RLGLVVGFA SLVSFSLVC VTFAVCSCM RRRARDAVQ EQKRLAELQ ENALDRPIA IFAKGEISF KFPLDLTER KVEVSTIDE IKKDTQSLP NGTGI
- >TC013196 RA
atgttgcgt caggtgtgg cgttcccac aaatatttg tggactgaa ttgtctgtt tcctgcagg atgctgtgg tggctgttg ctggggctg tgttccacc agcggcgtc gccctctgc ccgtccatg tgccagtgc ggcgtgacg tccaagggc cggcggaag gtgcagtgc gtcgagggc ggcatgacg gaggccatc cccacgcac gagatggac gccggcacc gaggtgctg gagatctcg gcgccggcc ggcgactgg aacgcgctg agcatctcg ccgacgttc cagcgcttc aagcgcctg gaggaggtg cacatccgg cgctccggc ctcacccag gtcggcatg caccccttc tggggcgtg ccctcgctc aaactgctc gatctgacg gtgaataat atcagtggt gtggccgat cataacttc cgcggcttg gtgaatcta gtggagttg aatttggac gataacaga ataacaagt ttgcaaagc ggggttttt aagcatttg accgagcta aggatattg actctgcag aggaatttg ctcgacgaa ttagtgcct cggctgttt ttaaaactc ggaaaactt cacatgctc aaacttagc gggaataaa ttcgatgaa cttaatcca gaagtgttc aaggatatt ccagaactg cgtgtcctg gaatgtcgc gagtgcggc ctgcgccgc atcaacacc caaatctac cacttgctg ccttattta tcccacctg gatctgggc gacaaccag atgcagttc atcgcctcg gacgagttc cgcgacttg aagcgtctc cacagcctg aagctggac ggcaaccag ctgccggtg gtgctcgag cacaccttc gtgcgccag caagaactc aagtatctg tgtttggcg cgcaatcgc ttggccaaa atcaccaac acggccttc gtgaacctc tcaagcctc gccgacctg gacatcggc tacaacaag ctcgaccgg ctggagatg caggccctc cagcccgtc gccgacacc ctcgagcgc ctcgtaatc agcggcaac gcgttcggt cctaatgtg atacgcaac attttgaac acagtttac aacgtgcgc gagctcggg gtggcccac atgaacctg cgccacatc ccgaagggt tttttcccg gagcgcgtc cggaaattg aacgtctcg gcgaataat ctgaccgag ctcgagtcc gggagcctc ccccggcag ctgctcgag ctcgacttg agtcacaac gacttgcag cgcctctcc gagagcctc attttgaag ctggaggat ttgcatgca gtgtctctc ggctctaat ccctggtcg tgccgagtg tgcgattta agctccata attttccgc ctaaaccgc actaatctc ttccggaac gtcacgtgt gccgcgccg aagccgctc caagggcgc gagatctcc gcgctgcac ctggaggac ctgcccggg tgcaagccg ccgtcgcag gacgccgcc aagacgggg aggctgggc ctggtggtg gggttcgcg agtttggtc tcgttttcg ctggtttgt gtgacgttc gcagtgtgc tcgtgtatg agaaggcgg gctagggac gcggtccag gagcagaag cgactcgcg gagctgcag gagaacgcg ctggatcga ccgattgcg attttcgcc aagggcgag atcagcttt aagtttccg ctggatttg accgagagg aaagtggaa gtctcgacg atcgacgag atcaagaaa gatacacag agtttgccg aacggaacg ggaatttga
- >TC013196 RA
tttcttgtt tatttgtta ataataatg tcaggttgg gcagattat gttgcgtca ggtgtggcg ttcccacaa atatttgtg gactgaatt gtctgtttc ctgcaggat gctgtggtg gctgttgct ggggctgtg ttccaccag cggcgtcgc cctctgccc gtccatgtg ccagtgcgg cgtgacgtc caagggccg gcggaaggt gcagtgcgt cgagggcgg catgacgga ggccatccc cacgcacga gatggacgc cggcaccga ggtgctgga gatctcggc gccggccgg cgactggaa cgcgctgag catctcgcc gacgttcca gcgcttcaa gcgcctgga ggaggtgca catccggcg ctccggcct cacccaggt cggcatgca ccccttctg gggcgtgcc ctcgctcaa actgctcga tctgacggt gaataatat cagtggtgt ggccgatca taacttccg cggcttggt gaatctagt ggagttgaa tttggacga taacagaat aacaagttt gcaaagcgg ggtttttaa gcatttgac cgagctaag gatattgac tctgcagag gaatttgct cgacgaatt agtgcctcg gctgttttt aaaactcgg aaaacttca catgctcaa acttagcgg gaataaatt cgatgaact taatccaga agtgttcaa ggatattcc agaactgcg tgtcctgga atgtcgcga gtgcggcct gcgccgcat caacaccca aatctacca cttgctgcc ttatttatc ccacctgga tctgggcga caaccagat gcagttcat cgcctcgga cgagttccg cgacttgaa gcgtctcca cagcctgaa gctggacgg caaccagct gccggtggt gctcgagca caccttcgt gcgccagca agaactcaa gtatctgtg tttggcgcg caatcgctt ggccaaaat caccaacac ggccttcgt gaacctctc aagcctcgc cgacctgga catcggcta caacaagct cgaccggct ggagatgca ggccctcca gcccgtcgc cgacaccct cgagcgcct cgtaatcag cggcaacgc gttcggtcc taatgtgat acgcaacat tttgaacac agtttacaa cgtgcgcga gctcggggt ggcccacat gaacctgcg ccacatccc gaagggttt tttcccgga gcgcgtccg gaaattgaa cgtctcggc gaataatct gaccgagct cgagtccgg gagcctccc ccggcagct gctcgagct cgacttgag tcacaacga cttgcagcg cctctccga gagcctcat tttgaagct ggaggattt gcatgcagt gtctctcgg ctctaatcc ctggtcgtg ccgagtgtg cgatttaag ctccataat tttccgcct aaaccgcac taatctctt ccggaacgt cacgtgtgc cgcgccgaa gccgctcca agggcgcga gatctccgc gctgcacct ggaggacct gcccgggtg caagccgcc gtcgcagga cgccgccaa gacggggag gctgggcct ggtggtggg gttcgcgag tttggtctc gttttcgct ggtttgtgt gacgttcgc agtgtgctc gtgtatgag aaggcgggc tagggacgc ggtccagga gcagaagcg actcgcgga gctgcagga gaacgcgct ggatcgacc gattgcgat tttcgccaa gggcgagat cagctttaa gtttccgct ggatttgac cgagaggaa agtggaagt ctcgacgat cgacgagat caagaaaga tacacagag tttgccgaa cggaacggg aatttgaag cttgatggg agggatggg gtgttgtct gtgggaacg cggggaaaa catatcgag aggtgctca catcgagac catatcaaa cggatatag tgaattata gtgcctgag ggaggggcg gggtaatga gcccgaagg attgttgca atcactgat aaacgatac ggtttgtac caaattttt ggcaccctg tagaatggc ccaaataaa atttaaatg cagtt
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
