General information | |||
TC002813 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007418.3: 9247405..9249175 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC002813 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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* : mandatory fields
Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_07983 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)
eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)embryo/egg with embryonic tissue potentially present, no cuticle, no fluorescence - Penetrance (percentage of animals/eggs on slide): less than 30%
larval musculature random not present - Penetrance (percentage of animals/eggs on slide): 50% - 80%
affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): more than 80%
remarks: muscle pattern potentially obscured by segmentation defect,
cuticle remnants with unidentifyable segments - Penetrance (percentage of animals/eggs on slide): less than 30%
larva everted (inside-out) - Penetrance (percentage of animals/eggs on slide): less than 30%
labrum size decreased - Penetrance (percentage of animals/eggs on slide): 50% - 80%
labrum complete not present - Penetrance (percentage of animals/eggs on slide): 30% - 50%
labrum position irregular - Penetrance (percentage of animals/eggs on slide): 50% - 80%
head not present - Penetrance (percentage of animals/eggs on slide): less than 30%
thorax not present - Penetrance (percentage of animals/eggs on slide): less than 30%
abdomen not present - Penetrance (percentage of animals/eggs on slide): less than 30%
affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): more than 80%
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC002813 RA
MHTIFTEHQ NAYYRPGGG YSTAAAAVT ATANPYAYE QYSRYGYAA WHHQQHQLS TAKDMVKPP YSYIALIAM AIQNAPDKK ITLNGIYQF IMERFPYYR ENKQGWQNS IRHNLSLNE CFVKVPRDD KKPGKGSYW TLDPDSYNM FDNGSYLRR RRRFKKKDA LREKEEAIK RQQLDSNVT AKRDEKPLE EAKKLECKP KREPAELTQ CKYNDVKSV IVHQEHVIS EAMAMDSAA AFTVDSLMT TREQHAYGN SGRLHTSGG MYYCPSATP QQYIGDEAA PRYSPWYSP ETSPESGYR DMIFDSSAA PSCQLAGFR HSGVSPSPP NYRTAAAYY QQDCVGQKY
- >TC002813 RA
atgcatacg attttcacc gaacatcag aatgcctac taccggccc gggggcggc tatagcacc gccgccgcc gcggtgacc gccaccgcg aacccctac gcctacgag cagtactcc cgttatggc tacgccgca tggcaccac caacaacac caattatcc accgccaag gacatggtc aaaccgccg tattcctac atcgcgctc atcgccatg gccatccag aacgccccc gacaagaaa atcaccctc aacggcatc taccagttc ataatggag cgctttccc tactaccgc gagaacaaa caaggctgg cagaactca atccgtcac aacctcagc ctgaacgaa tgtttcgtc aaagtccca cgggacgac aaaaagccg ggaaaaggg agctactgg acccttgac ccagactcc tacaacatg ttcgacaac ggctcgtac ctgcgccgc cggcggcgc ttcaagaag aaggacgcc ctccgcgag aaggaggaa gccatcaag cgccaacag ctcgactcc aacgtcacc gccaagcgc gacgaaaaa ccgctggag gaggcgaaa aagctcgag tgcaagccc aagcgcgag cccgcggag ctcacccag tgcaagtac aacgacgtc aagtcggtc atcgtgcac caggagcac gtcatcagc gaggccatg gcgatggac tcggcggcg gccttcacc gtcgactcg ctgatgacg acgcgggag cagcacgcc tacggcaac tccgggcgc ctgcacacc tccggaggg atgtactac tgccccagt gccactccg cagcagtac atcggggac gaggccgcg ccgaggtac agcccctgg tacagcccg gaaacgtcc ccggagtcc ggctacagg gatatgatt ttcgacagc agtgcggcg cccagctgt caattggcg gggtttagg cactccggg gtctcgcca agtccgcct aattataga acggcggcg gcttactac caacaggac tgtgtggga cagaaatac tga
- >TC002813 RA
aactgtttt cactagtaa catcgtgtc tcggcaaga agcaacata ctctgtttt tacttaatc tttgtgtaa actgcccca tgttgtgta tcataatat taagtgaac gcaaacttg ttttcggaa gattgattg gaatgaaaa cacaaaacg cactatact gttgaaata acaagactg ttttcgttt tagaaaact ctcggcctt ttgtcttgt ttgttgttt ttgcgtgta aacatgcat acgattttc accgaacat cagaatgcc tactaccgg cccgggggc ggctatagc accgccgcc gccgcggtg accgccacc gcgaacccc tacgcctac gagcagtac tcccgttat ggctacgcc gcatggcac caccaacaa caccaatta tccaccgcc aaggacatg gtcaaaccg ccgtattcc tacatcgcg ctcatcgcc atggccatc cagaacgcc cccgacaag aaaatcacc ctcaacggc atctaccag ttcataatg gagcgcttt ccctactac cgcgagaac aaacaaggc tggcagaac tcaatccgt cacaacctc agcctgaac gaatgtttc gtcaaagtc ccacgggac gacaaaaag ccgggaaaa gggagctac tggaccctt gacccagac tcctacaac atgttcgac aacggctcg tacctgcgc cgccggcgg cgcttcaag aagaaggac gccctccgc gagaaggag gaagccatc aagcgccaa cagctcgac tccaacgtc accgccaag cgcgacgaa aaaccgctg gaggaggcg aaaaagctc gagtgcaag cccaagcgc gagcccgcg gagctcacc cagtgcaag tacaacgac gtcaagtcg gtcatcgtg caccaggag cacgtcatc agcgaggcc atggcgatg gactcggcg gcggccttc accgtcgac tcgctgatg acgacgcgg gagcagcac gcctacggc aactccggg cgcctgcac acctccgga gggatgtac tactgcccc agtgccact ccgcagcag tacatcggg gacgaggcc gcgccgagg tacagcccc tggtacagc ccggaaacg tccccggag tccggctac agggatatg attttcgac agcagtgcg gcgcccagc tgtcaattg gcggggttt aggcactcc ggggtctcg ccaagtccg cctaattat agaacggcg gcggcttac taccaacag gactgtgtg ggacagaaa tactgaggg tacgcgtat catctcaat atcaagact gatgtttga aggttttgt gcgattccg gcctccaag gaattccag tagtgcatg gtggaaatt atagaggtg taggagagg tttagtgag acgattttt cactttcct acaggtctg taatttttt ttcattcga aatcgtttg gctttgttt cgttccaac ggcagctgg ttttattta tgtgatatg ttgatagtg taatttcgt tttttcgaa aatttatat ttttttatt attaggaat ggtgtttct ttttttgta ttatactca taggttcct ataaagatt ttaaccatt ccccgatga atttgcggc atttatcgg ttatcaact ttatagaaa gtaattacc ttacgtgtc cggtgtaca tatttattt gtaaaataa tgtagatgt attattacc cactgtatg tgttgaaag cacgtatgt atattattt attgacttt aaagaaata aatcacacc attgtgg
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
