General information | |||
TC003598 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007418.3: 8684225..8686896 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC003598 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_07980 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 0.0% (includes death as pupa, adult)
embryo/egg without visible larval cuticle in cuticle preparation - Penetrance (percentage of animals/eggs on slide): less than 30%
cuticle remnants strongly fragmented (cuticle crumbs) - Penetrance (percentage of animals/eggs on slide): less than 30%
head not present - Penetrance (percentage of animals/eggs on slide): 50% - 80%
thorax not present - Penetrance (percentage of animals/eggs on slide): 50% - 80%
abdomen not present - Penetrance (percentage of animals/eggs on slide): 50% - 80%
affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): more than 80%
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC003598 RA
MEKFDWRCP IRINLLLLR SVGLWPRGY GVYKRNYYL FYSIFTTIT IVGGHNLSQ VINIFYVYS DLEALTGTI FVATTNILA LVKRYVFVR NLPLIKEIL QTLNTYQFH PKTRQQLKI IQAPLRRWK LAYLCFSII VYFNVAMWT LEPLLDKMI KNRRLPFEA WYPFNSKQS PNYEIAYCY QFICIWNIT IANLNLDTL IFAFMMFIS AQCEILCDD LRSLDVGFG PKLIQCIKH HKEILRLAK VTNNIFNFI ILGQIATST AALALTMFQ LSLISSINT TALTHFAYM MGMLSEILL YCWFGNEIE VKSYLIPNA AYESQWMHQ DRSVAKNLL ILGCRCRKP IKITAINLF TLSLPTFIA ILRSAWSYF ALLSTINGK
- >TC003598 RA
atggaaaaa ttcgattgg agatgtccg atccgaata aacctcctt ctactaaga tctgtcggg ttgtggccc cgaggatac ggagtttac aaacgcaac tattacctc ttctactcc atattcacg acaattaca atcgtcggc ggccacaat ttatcgcaa gtcataaac attttctac gtttattcg gacttggag gctttgacg ggtaccata tttgtggca acaaccaac atcctggcc ctcgttaag agatacgtt ttcgtacgc aacctcccc ctcataaag gagattctg cagactttg aacacttac cagtttcac cccaaaact cggcaacag ctaaaaatc atccaagcg ccacttcgt cgctggaaa ctggcctac ctttgtttt tccattatt gtttatttc aacgtggcc atgtggacg cttgaaccg cttttggac aaaatgatc aaaaatcgg cggttgccc ttcgaagct tggtatcct ttcaacagc aagcaaagc cccaactac gaaatcgcc tactgctac cagttcatt tgcatttgg aacataact atcgctaat ttgaacttg gacactttg attttcgcc ttcatgatg ttcatttcg gcccaatgt gagattctt tgtgacgac ttgaggagt cttgacgtc ggttttggg ccaaaattg atacagtgt atcaaacac cacaaggaa attttacgc ctcgcaaag gtcactaac aacatcttc aattttatt attttaggg caaatagcc acaagtacg gccgctctc gctttaacc atgtttcag ctaagtcta atcagctcg ataaacacc accgctctc actcatttt gcctacatg atgggcatg ttgagtgag attttgttg tactgttgg ttcggtaac gaaattgaa gttaagagt tatttgatt ccgaacgca gcctacgag tcgcaatgg atgcaccag gaccgaagt gttgcgaaa aatttgctt attttgggc tgtcgttgt cgcaaaccg atcaaaatt acggcaatt aatttgttt acgctctct ttaccaacg tttattgcg attcttcgg tccgcatgg tcgtatttt gccttatta tccacaatt aatggcaaa taa
- >TC003598 RA
ttaggcctg tgagtgacc gaaagcact ataaaaagc tcgacatga atttgtttt acgcattta tttgttgtc ccgagtgct ccaaacaat atttcaatg gaaaaattc gattggaga tgtccgatc cgaataaac ctccttcta ctaagatct gtcgggttg tggccccga ggatacgga gtttacaaa cgcaactat tacctcttc tactccata ttcacgaca attacaatc gtcggcggc cacaattta tcgcaagtc ataaacatt ttctacgtt tattcggac ttggaggct ttgacgggt accatattt gtggcaaca accaacatc ctggccctc gttaagaga tacgttttc gtacgcaac ctccccctc ataaaggag attctgcag actttgaac acttaccag tttcacccc aaaactcgg caacagcta aaaatcatc caagcgcca cttcgtcgc tggaaactg gcctacctt tgtttttcc attattgtt tatttcaac gtggccatg tggacgctt gaaccgctt ttggacaaa atgatcaaa aatcggcgg ttgcccttc gaagcttgg tatcctttc aacagcaag caaagcccc aactacgaa atcgcctac tgctaccag ttcatttgc atttggaac ataactatc gctaatttg aacttggac actttgatt ttcgccttc atgatgttc atttcggcc caatgtgag attctttgt gacgacttg aggagtctt gacgtcggt tttgggcca aaattgata cagtgtatc aaacaccac aaggaaatt ttacgcctc gcaaaggtc actaacaac atcttcaat tttattatt ttagggcaa atagccaca agtacggcc gctctcgct ttaaccatg tttcagcta agtctaatc agctcgata aacaccacc gctctcact cattttgcc tacatgatg ggcatgttg agtgagatt ttgttgtac tgttggttc ggtaacgaa attgaagtt aagagttat ttgattccg aacgcagcc tacgagtcg caatggatg caccaggac cgaagtgtt gcgaaaaat ttgcttatt ttgggctgt cgttgtcgc aaaccgatc aaaattacg gcaattaat ttgtttacg ctctcttta ccaacgttt attgcgatt cttcggtcc gcatggtcg tattttgcc ttattatcc acaattaat ggcaaataa tacactaaa taacttgaa cttgtaaag tagggaaaa cacaaaaat agtagtcaa aattgcgtc acttttatg taatagttt aatttataa aattcaaaa aggagaaga ccaacgaat tttgttcat ttaacgatt ttattgtaa ttttttagt cgcaagtca aattagaga cgggcttgt tgcaagaaa acactcagt tgggctata atatttttc ttcattaaa gttgtttgt atttttatt agagacttc tggtatgtc tactttgta atttactgt catttcaga cggaatatt tataaggca gtaagccaa gtccccttt tattttatt ctaaacgat gtaaaaaac ttaaaaaaa tccttataa atcactttc aatcaagat aaacaacac atgttctaa gggaaaaat gtctgggcc tgttttttc caatttttt tgatttttt tccaaaaat aattaaaaa attccttgt tactatttt ataaaataa taagcaggt atttgaatg gcataattt tgtctagtt aaagtaaat gtagctcgt tatgtctta gtaaggtat aaaaagcca acttcatta tttttcttt tcattcaag tttaccttc agccgcacg tttgtgaaa acttttagg agatgtttc atatttttt gtgtcgagt ggaatattg ttcacattt tatatttat tacaagttt tactaatcc ttgttttaa atcatttac taacacgca gctggattt ttaacttct gcaacgagt tattaaaaa tttttaaaa ttaagtgtt tttgtgaaa tttctttga agtttaatt tagacggtt tagtgctag atcttacac ttgaatatt ttcctcgat aatttataa gtcagtgag ttttgcatt ttgttgtta ttttaattt taatttata tttttcagg ctactcgta tgtttagat ctttgctta ccaataaaa taatgctta tact
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
