| General information | |||
| TC032153 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007417.3: 10273915..10276151 | |
| Sequence information | |||
| Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
||
| Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
| Closest fly homologs | TC032153 | ||
GO terms for Tribolium
-
{{ goTerm.term }} ({{ goTerm.evidence }}){{ goTerm.evidenceTooltip }}{{goTerm.showAll ? '[-]' : '[+]'}}Status: {{ goTerm.status }}
Evidence: {{ goTerm.evidence }} ({{ goTerm.evidenceTooltip }})
Reference: {{ goTerm.referenceText }}
Quotation: {{ goTerm.quotation }}
Submitter: {{ goTerm.name }}
There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
| Gene | {{ goGene }} |
|
|---|---|---|
| GO ID | * {{ blurIdResult }} |
|
| Evidence | {{ blurEvidenceResult }} |
|
| Reference | * {{ blurReferenceResult }} |
|
| Quotation | ||
| Name | ||
| Publish name | ||
| {{ unavailableText }} |
* : mandatory fields
Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
| General information | ||||
| iB_07873 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
||
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 40.0% (includes death as pupa, adult)
eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)adult lethality - Number of animals showing the phenotype: 2 (9 dpi)
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC032153 RA
MDDSKLTVR ESSRIIKEK SLDYVPDPR GLGYEFYQA MFLNQNAVA QIDAESGCA DSYGNLLER CIRTAIRLL VAGITKRDI ICHCSSNHI NSCVPIICA FFLGVPVAP VDPTLSYDE AFEILAQIR PRVIFVTPD VVDTIEMAL GEINIECEI VLFGSSPDF VEFDSFLEP DEEESHFQP LEISDIRET AVIAFTKGQ KDDYKGVCL SHYAIMMQC LNTISCCNF GNTFCLSNR EPDKNVNGF ETALSFNTF ARIAEIELL CCCTFTGIT KIINQKFDP TFAWRTIDK HEVSFMTCT SFQAIQLYK IGKPEGVVG TTLKMLLTQ GTSLSKASL YELRKLLPY CFITNCYGL TETTGRVTM FAFTKPGDI RDQYENPTS CGKLVSGMT CKIVDPITE KILGPNQAG ELRFKSDLM MNGYLKQDH SDLFDKDGW VKTGDVALY DDKHRFFVL NRLKDVFKC YSWHIAPVI IENVIKEHP AVKDAVVIG IFEDIKAWN QIPMAVVTL NRGMRNRVT GKDIQMWAN SKLSKKQQL KAGVKIVKQ IPITIAGEP KRQQVKDMV LCENL
- >TC032153 RA
atggacgac tccaaattg acagtcaga gaaagttcg cggattatt aaagagaaa agccttgat tatgttcct gatcctcga ggattagga tacgagttt taccaagcg atgtttctt aatcaaaat gcagtggct cagattgac gcagaaagt ggatgtgcg gattcatat ggcaatctg ctcgagaga tgtatccgt actgcgata cgtctactt gtcgcaggg attacgaaa cgcgatatc atatgccac tgtagcagt aatcacatt aacagttgt gtcccgatt atttgcgcc tttttcctg ggagtgccg gtggctccc gtagatccc acactctcc tacgacgaa gctttcgaa atccttgcc caaatcagg ccgagagtt attttcgtg accccggac gtggttgat acaattgaa atggcgctt ggtgaaatt aatattgaa tgcgagatt gtgctgttt ggctcaagc ccggatttt gttgaattt gactcgttt ctggagcca gacgaagaa gaaagccac tttcagccg ttggagata tcggatatt agggaaacc gcggtcatt gcattcacc aaaggacaa aaagatgat tacaaaggc gtctgtttg agccactat gcaatcatg atgcagtgt ttaaacaca atatcctgt tgcaatttc ggaaatacg ttttgtttg tccaatcgc gagccggac aaaaacgta aatgggttc gagacagct ttaagcttc aacacattt gccagaatt gctgaaatt gagctcctc tgttgctgc actttcacg gggattact aaaataata aaccaaaaa tttgatccc acatttgcg tggcgcacc atcgacaaa catgaagtg agtttcatg acttgtacg tcgtttcaa gcaatccag ttgtacaaa attggaaag cctgaaggg gtcgttggc acaactttg aaaatgctg ctaacacaa gggacttct ttgtcaaaa gcaagtctg tacgaattg cgaaaactt ctcccatat tgctttatt acaaattgt tatggatta actgaaacc actggccgt gttacaatg tttgcgttt acaaaaccg ggggatata agagatcaa tacgaaaat cccacgtct tgtgggaag ctagtgtcg ggaatgact tgcaaaatc gtagacccc attacagaa aaaattttg ggtccaaat caagccggt gaactgcgc tttaaaagc gatttaatg atgaacggt tatctcaaa caggaccat tctgatctt ttcgataaa gacggttgg gtgaaaact ggagatgtt gcgctttat gacgacaaa catcgcttc tttgtgctg aatcgtctg aaagacgtg tttaagtgt tacagttgg cacatcgcc cctgtgatt attgaaaac gttattaag gaacatccc gctgttaaa gacgctgtt gttatcgga atattcgaa gatattaaa gcttggaac caaatacct atggcagtg gtgacgctg aatagaggc atgcggaac agggtgacc ggcaaggac atacaaatg tgggcaaac agcaaatta agcaaaaaa caacaacta aaagcgggg gtgaaaatt gtcaaacaa attccaatc acaatagcc ggagagccg aaaaggcaa caagttaaa gatatggtg ttgtgtgaa aacttgtaa
- >TC032153 RA
tgacaatgt cacgcctga gagcctcgt ggcgattat tttaaattt tcagtttcg tgaacgcgt ttccaaaat tgaaaagtg gggatggac gactccaaa ttgacagtc agagaaagt tcgcggatt attaaagag aaaagcctt gattatgtt cctgatcct cgaggatta ggatacgag ttttaccaa gcgatgttt cttaatcaa aatgcagtg gctcagatt gacgcagaa agtggatgt gcggattca tatggcaat ctgctcgag agatgtatc cgtactgcg atacgtcta cttgtcgca gggattacg aaacgcgat atcatatgc cactgtagc agtaatcac attaacagt tgtgtcccg attatttgc gcctttttc ctgggagtg ccggtggct cccgtagat cccacactc tcctacgac gaagctttc gaaatcctt gcccaaatc aggccgaga gttattttc gtgaccccg gacgtggtt gatacaatt gaaatggcg cttggtgaa attaatatt gaatgcgag attgtgctg tttggctca agcccggat tttgttgaa tttgactcg tttctggag ccagacgaa gaagaaagc cactttcag ccgttggag atatcggat attagggaa accgcggtc attgcattc accaaagga caaaaagat gattacaaa ggcgtctgt ttgagccac tatgcaatc atgatgcag tgtttaaac acaatatcc tgttgcaat ttcggaaat acgttttgt ttgtccaat cgcgagccg gacaaaaac gtaaatggg ttcgagaca gctttaagc ttcaacaca tttgccaga attgctgaa attgagctc ctctgttgc tgcactttc acggggatt actaaaata ataaaccaa aaatttgat cccacattt gcgtggcgc accatcgac aaacatgaa gtgagtttc atgacttgt acgtcgttt caagcaatc cagttgtac aaaattgga aagcctgaa ggggtcgtt ggcacaact ttgaaaatg ctgctaaca caagggact tctttgtca aaagcaagt ctgtacgaa ttgcgaaaa cttctccca tattgcttt attacaaat tgttatgga ttaactgaa accactggc cgtgttaca atgtttgcg tttacaaaa ccgggggat ataagagat caatacgaa aatcccacg tcttgtggg aagctagtg tcgggaatg acttgcaaa atcgtagac cccattaca gaaaaaatt ttgggtcca aatcaagcc ggtgaactg cgctttaaa agcgattta atgatgaac ggttatctc aaacaggac cattctgat cttttcgat aaagacggt tgggtgaaa actggagat gttgcgctt tatgacgac aaacatcgc ttctttgtg ctgaatcgt ctgaaagac gtgtttaag tgttacagt tggcacatc gcccctgtg attattgaa aacgttatt aaggaacat cccgctgtt aaagacgct gttgttatc ggaatattc gaagatatt aaagcttgg aaccaaata cctatggca gtggtgacg ctgaataga ggcatgcgg aacagggtg accggcaag gacatacaa atgtgggca aacagcaaa ttaagcaaa aaacaacaa ctaaaagcg ggggtgaaa attgtcaaa caaattcca atcacaata gccggagag ccgaaaagg caacaagtt aaagatatg gtgttgtgt gaaaacttg taattgttt ttgtaatat agtacaata tttgcgtct gtagttaat tttggtggc tcaaaatct cgcaattaa tttcaagcg taaagggta aaacataat taatcgttt agtgtgacg cactaatct gcaatgtcc aactccgcc cacttctaa ctgtttgtc cattgcggc aaacgttat caagataat ctccaagtg ggctacact ttgatcaaa attggcttt aaaatcttg gtcttttca gtctactaa atttgatta caaaat
