General information | |||
TC004849 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007417.3: 3049299..3054086 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC004849 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_07795 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 40.0% (includes death as pupa, adult)
eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 4 (3 dpi)embryo/egg without visible larval cuticle in cuticle preparation - Penetrance (percentage of animals/eggs on slide): more than 80%
affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): more than 80%
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC004849 RA
MESSEAPSS GKDSSQCKV LIVGAGMAG LSAAYHLSK NGFNDYKLL EARNRVGGR IVQIKMGSE PVELGANWI HGVLGNPVY ELAMQHGLV DIMQTPKPH KVIAATENG KQVPFATLH EIYEAYLCF LRRCEEYFL SQYLPPEGI DSVGDHIKL EISLYLDKV QDPRDRHLR ELLFECLLK RETCISGCD DMSEIDLLE LGTYTELQG GNITLPGGY SSILGPVTQ AIPAENLLV GHPVSQIRW NLNKRNSID NGNDSDDSD RTVIEETTK ESNSPNVEV HCDNGKVFK ADQLICTIP LGVLKYNKD TLFQPPLPE YKREAIDRL LFGTVDKIL LEYERPFLH PSITEVLLL WESDTEHPE GQNDLSKNW YKKIYSFSK ITETIILGW ISGKEAEYM ETLSKDEIK DTCTTVLRK FLNDPFIPK PKNVVCTSW HSQPYTRGS YTAIAVGAS QIDIECLAQ PLFLDEEET KPVVLFAGE HTHCNFYST VHGAYLTGR TAAQAVLHA DAPQEMVLD CEDDADLSS WVQGICLE
- >TC004849 RA
atggaaagc tccgaagcc ccctcaagc ggaaaagac tcgtcgcaa tgtaaagtg ttgatcgtg ggggcgggc atggcgggg ctctccgcc gcctaccac ctctccaag aacggtttc aacgactac aagctcctg gaggcccgc aaccgggtc gggggccgt atcgtgcaa attaaaatg gggagcgaa ccggtggaa ctgggggcc aactggatc cacggagtg ctgggcaac cccgtgtac gaactggca atgcagcac ggtctcgtc gacattatg caaacgccc aaaccccat aaagtaatc gcggcgacc gaaaacggg aagcaagtc ccttttgca accttgcac gaaatctac gaagcatat ctgtgtttt ctgcggcgc tgcgaggag tatttttta tcgcagtat ttgccccct gaaggcatc gacagtgtg ggtgatcac attaagtta gagattagt ttgtatctg gacaaggtc caggacccg cgtgataga cacttgagg gaactgttg tttgagtgt ttgttgaaa cgggagact tgtatcagt gggtgcgac gatatgagc gaaattgac ttgctcgag ttggggacg tacacggag ctgcaaggg gggaatatc acgcttcca ggggggtac agctccatt ttggggccc gtgacgcaa gccattccc gcggaaaac ctgctagtg gggcacccg gtgtcccaa atccggtgg aatctcaac aagaggaac agtatcgac aacgggaac gactcggat gattccgac cggactgtg attgaggaa accacgaaa gaatcaaat tcgcccaac gttgaagta cattgtgat aacgggaaa gtattcaaa gccgaccaa ctcatctgc accattccg ttaggggtc ctaaagtac aataaagac actcttttc caaccacct ttacccgaa tataaacgc gaggcgatt gaccggttg ctattcggg accgtagat aagatttta ctagagtac gaaagaccg tttttacac cccagtatt accgaagtt ttgctcttg tgggagtca gatactgag catcccgaa ggtcagaat gacctgagc aaaaattgg tacaagaaa atctactcg ttttccaaa atcactgaa actattatc ctcggctgg atttcgggg aaagaagct gagtatatg gagacgttg tcaaaagac gagattaaa gacacctgc acgactgtt ttacggaag ttcctcaat gaccctttc atacccaaa ccaaaaaat gtagtttgc acaagctgg cacagtcag ccctatacc cgcggctcc tacactgcg atagccgtg ggggcctca cagatcgac atcgagtgt ctggcacaa cccctattc ctcgacgag gaagaaact aaacctgtg gtattattc gctggcgaa catacccac tgtaatttt tactcaaca gttcatggg gcttattta actgggaga acagcggca caagcagtt ttacacgca gatgccccc caggaaatg gtgctagat tgtgaagat gatgccgat ttgagttcg tgggtgcaa ggaatctgt cttgagtaa
- >TC004849 RA
atggggctg caagtatgg aaagctccg aagccccct caagcggaa aagactcgt cgcaatgta aagtgttga tcgtggggg cgggcatgg cggggctct ccgccgcct accacctct ccaagaacg gtttcaacg actacaagc tcctggagg cccgcaacc gggtcgggg gccgtatcg tgcaaatta aaatgggga gcgaaccgg tggaactgg gggccaact ggatccacg gagtgctgg gcaaccccg tgtacgaac tggcaatgc agcacggtc tcgtcgaca ttatgcaaa cgcccaaac cccataaag taatcgcgg cgaccgaaa acgggaagc aagtccctt ttgcaacct tgcacgaaa tctacgaag catatctgt gttttctgc ggcgctgcg aggagtatt ttttatcgc agtatttgc cccctgaag gcatcgaca gtgtgggtg atcacatta agttagaga ttagtttgt atctggaca aggtccagg acccgcgtg atagacact tgagggaac tgttgtttg agtgtttgt tgaaacggg agacttgta tcagtgggt gcgacgata tgagcgaaa ttgacttgc tcgagttgg ggacgtaca cggagctgc aagggggga atatcacgc ttccagggg ggtacagct ccattttgg ggcccgtga cgcaagcca ttcccgcgg aaaacctgc tagtggggc acccggtgt cccaaatcc ggtggaatc tcaacaaga ggaacagta tcgacaacg ggaacgact cggatgatt ccgaccgga ctgtgattg aggaaacca cgaaagaat caaattcgc ccaacgttg aagtacatt gtgataacg ggaaagtat tcaaagccg accaactca tctgcacca ttccgttag gggtcctaa agtacaata aagacactc ttttccaac cacctttac ccgaatata aacgcgagg cgattgacc ggttgctat tcgggaccg tagataaga ttttactag agtacgaaa gaccgtttt tacacccca gtattaccg aagttttgc tcttgtggg agtcagata ctgagcatc ccgaaggtc agaatgacc tgagcaaaa attggtaca agaaaatct actcgtttt ccaaaatca ctgaaacta ttatcctcg gctggattt cggggaaag aagctgagt atatggaga cgttgtcaa aagacgaga ttaaagaca cctgcacga ctgttttac ggaagttcc tcaatgacc ctttcatac ccaaaccaa aaaatgtag tttgcacaa gctggcaca gtcagccct atacccgcg gctcctaca ctgcgatag ccgtggggg cctcacaga tcgacatcg agtgtctgg cacaacccc tattcctcg acgaggaag aaactaaac ctgtggtat tattcgctg gcgaacata cccactgta atttttact caacagttc atggggctt atttaactg ggagaacag cggcacaag cagttttac acgcagatg ccccccagg aaatggtgc tagattgtg aagatgatg ccgatttga gttcgtggg tgcaaggaa tctgtcttg agtaactgc cttaaatat tgtgttttc gttaatttg tgaacgact agtagtcaa ttttaggac cgcttaact ttttgttac cgtttaaac tatcacggc ttcattggt caacgaaag ttgagttac tatggttaa ctgtggtaa ttggtcaaa gaagctgtg aaatcagtt gttactttt ataggcttt acatgatgt atgctagtc attttttta aga
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
