General information | |||
TC002078 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007425.3: 6146683..6148536 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC002078 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_07716 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 0.0% (includes death as pupa, adult)
embryo/egg without visible larval cuticle in cuticle preparation - Penetrance (percentage of animals/eggs on slide): more than 80%
Comment: Few empty eggs while remaining shows empty hatched eggs shells. |
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC002078 RA
MSCVTHLNF EVKNMSSTY LKVTFFEAG GEFEVCDEW KYRVVSFAV SEIYHKGVK SARKLAEGS KTVYKLGLD LEGVGVDFM PGDTIGVLP RNDESLVEK IFIRLGVEA QADQPCELG VSPNSGKKN AVVPKHLPV RSTLRTIFL NHVDLHTPP KKLFLKSLL GFATGSDAS RLTSLSSPQ SPDYSDFIA SNPSLLNVL ETFPSLTPP ISLLLEHLP PLQPRPYSI CSSPLSHTL EITFDVTGL CTKFMEKQI SSKNQIAFY FRKPGLFRL PNLANPVIM IATGTGIAP FRGFLQHWK LANEFGDVW LFYGCRFRD RDFLFKDEI NELMCEGIV NRLNVAFSR ESDSKKYIQ SEIDKRGAD FVDWVNRGA RIYVCGDFR TVVKDVRTC VAKNLVKYG GLDEEKAED FVKGDRFIV DTWN
- >TC002078 RA
atgtcatgt gttacacat ttgaatttt gaggttaaa aacatgtct tcaacttat ttgaaagtc acatttttt gaggctggg ggcgagttt gaggtttgt gatgagtgg aaatatcgg gtggtctca tttgcggtt agtgaaatt taccacaaa ggggtgaaa agtgcaagg aaattggca gaagggtcg aaaacggtt tataaatta gggctggat ttggagggt gtgggggtt gattttatg ccgggggac accattggg gtgctccca cgtaacgat gagtcccta gttgagaaa attttcata cggttgggg gtcgaagcc caggctgac caaccgtgc gaattgggg gtttcaccc aacagtggg aaaaaaaac gcagtggtg ccaaaacac ctcccggtg cggagcacc ctaaggacg attttccta aatcatgtg gatttgcac acgccgccc aaaaaattg tttctcaag tcgttactc ggcttcgcc acgggctcg gacgcttct agactcacc tccctctcc tccccccaa tcccccgac tactctgat tttatcgca tcaaatccc tcgttactt aacgtcctt gagacgttc ccctccctc accccgccc atttcgctc ctccttgaa cacctccca ccgctccag ccccgcccc tactccata tgctcctcc cccttgtca cacacgctc gaaatcacg ttcgacgtc actggtctg tgtacgaaa ttcatggaa aagcaaatt tcgtccaaa aatcaaatc gccttctat ttccgcaaa ccgggatta ttccggctc ccgaatttg gcgaatccg gtgattatg atcgccacg ggcaccgga atcgcccca ttccgggga ttcctccaa cactggaaa ttggcaaac gaattcggc gatgtttgg ttgttttac ggttgccgt ttcagagat cgtgatttt ttattcaaa gacgaaatc aacgaactg atgtgtgaa gggattgtg aatcgttta aatgtcgcg ttttcacgc gagagtgac tcgaaaaaa tatatacag agtgagatt gataagcga ggggcggat ttcgtcgat tgggtcaat cggggggct cgtatttac gtttgtggg gattttagg actgtggtc aaggatgta cggacttgt gtggcaaaa aatttggtt aaatacggc ggacttgac gaggaaaaa gccgaggat tttgtcaaa ggggataga tttattgtc gacacttgg aattaa
- >TC002078 RA
ttctccaac ccccaaaaa cgaaaaatt ttaatgagg tacaaatcg gcaaaaaac actaaaaca cgaaaaaac aaccccccg aacggccca aacgccact aacacgtcc agccgcccc cctacaacc cactcggac gtttcgccc ccctttttg cacaatttt ctcgaaatt tttggaaat ttttacgca ataatagga cgtgttcac gaataaggg ggcccgtaa cgcgattat tgtcacaat tttcgctta attgtgcta ttttgtggc attttgaca gcacttgac aaggaccca accaacatg tcatgtgtt acacatttg aattttgag gttaaaaac atgtcttca acttatttg aaagtcaca ttttttgag gctgggggc gagtttgag gtttgtgat gagtggaaa tatcgggtg gtctcattt gcggttagt gaaatttac cacaaaggg gtgaaaagt gcaaggaaa ttggcagaa gggtcgaaa acggtttat aaattaggg ctggatttg gagggtgtg ggggttgat tttatgccg ggggacacc attggggtg ctcccacgt aacgatgag tccctagtt gagaaaatt ttcatacgg ttgggggtc gaagcccag gctgaccaa ccgtgcgaa ttgggggtt tcacccaac agtgggaaa aaaaacgca gtggtgcca aaacacctc ccggtgcgg agcacccta aggacgatt ttcctaaat catgtggat ttgcacacg ccgcccaaa aaattgttt ctcaagtcg ttactcggc ttcgccacg ggctcggac gcttctaga ctcacctcc ctctcctcc ccccaatcc cccgactac tctgatttt atcgcatca aatccctcg ttacttaac gtccttgag acgttcccc tccctcacc ccgcccatt tcgctcctc cttgaacac ctcccaccg ctccagccc cgcccctac tccatatgc tcctccccc ttgtcacac acgctcgaa atcacgttc gacgtcact ggtctgtgt acgaaattc atggaaaag caaatttcg tccaaaaat caaatcgcc ttctatttc cgcaaaccg ggattattc cggctcccg aatttggcg aatccggtg attatgatc gccacgggc accggaatc gccccattc cggggattc ctccaacac tggaaattg gcaaacgaa ttcggcgat gtttggttg ttttacggt tgccgtttc agagatcgt gatttttta ttcaaagac gaaatcaac gaactgatg tgtgaaggg attgtgaat cgtttaaat gtcgcgttt tcacgcgag agtgactcg aaaaaatat atacagagt gagattgat aagcgaggg gcggatttc gtcgattgg gtcaatcgg ggggctcgt atttacgtt tgtggggat tttaggact gtggtcaag gatgtacgg acttgtgtg gcaaaaaat ttggttaaa tacggcgga cttgacgag gaaaaagcc gaggatttt gtcaaaggg gatagattt attgtcgac acttggaat taatttatt tatacatca tagaaaaac attacaata aaattatcg ccgtttttg gacctctgt gtaaatatc ccgttaagg aactataaa aatatcgta atttacaaa atatatagg gtggagcga cgaaattgt gggaataaa tgttcagtc atgtg
