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Gene information
General information
TC012952 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007425.3: 29411..31279
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
      TC012952
      iBeetle screen iB_07426

      Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

      iB sequence
      Phenotype after pupal injection
      Usually 10 injected animals

      Pupal injection procedure

      Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

      3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

      9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

      11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

      Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

      13 dpi: Egg productivity and Ovary analysis
      The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

      14 dpi: Analysis of embryonic musculature and early embryonic development
      Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

      15 dpi: Analysis of larval instar 1 cuticle
      Offspring of injected females were analysed and cuticle phenotypes were annotated.

      22 dpi: Stink gland analysis
      Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

      Terms used in the pupal injection procedure

      larval pantagmatic defects
      At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
      empty eggs
      Just empty shells are visible, no cuticle has been developed.
      strong defects
      L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
      strongly fragmented (cuticle crumbs)
      No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
      cuticle remnants (with unidentifiable segments)
      Segments or parts of appendages are recognizable, but identity is not clear.
      cuticle remnants (with some identifiable segments)
      At least one segment or appendage is clearly regonizable.
      number of eggs on slide
      affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
      For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
      total number of affected eggs/embryos/larvae
      Summary of all different phenotypes/ phenotypic series which were annotated.
      inside-out
      The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
      starved
      Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
      eclosion not fulfilled
      The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
      Please see the help page for more information
      Metamorphosis and survival

      Lethality 11 days after pupal injection: 30.0% (includes death as pupa, adult)

      eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 1 (3 dpi)
      Days post injection


      adult lethality - Number of animals showing the phenotype: 2 (9 dpi)
      Days post injection


      Analysis of larval stage 1 cuticle
      number of eggs/embryos/larvae on slide: < 20
      Phenotype after larval injection
      Usually 10 injected animals

      Larval injection procedure

      Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

      11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

      16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

      19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

      22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

      41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

      Terms used in the larval injection procedure

      pupal/ adult pantagmatic defects
      At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
      pupal molt not fulfilled
      The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
      eclosion not fulfilled
      The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
      starved
      Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
      Metamorphosis and survival

      Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
      Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

      RNAi sequence
      Primers
      Left: Right:
      Protein sequence
      • >TC012952 RA
        MDAIFGPQF EPNIFVYLD DIIITSKTF EEHILLLEE 
        VHKRLEDAN LTINLTKCK FFRKSLKYL GFIVEGNGL 
        RADPDKVKD MINYPNPKT TTEIKRFQG MCSWYRRFI 
        PHFSSLCAP LNNLIKNKD KGQKIIWTS EAQEAFLKI 
        KNALVSAPI LNSPNFSRP FIVQCDASD IGLGALLLQ 
        EIDGIEKIV AYASKTLSK AEKNYSVTE REALAVIFA 
        VEKFRPFIE GTRFTIPTD HNSLTWLFR LKEPTGRLA 
        RWIARLSQF DFDLRHIKG KLNVVPDAL SRIPTPDEI 
        AVLDLNFDN LDKWYTNLR NKILKYPDK YVGWKITDG 
        KIYKHLSSR LALNCNISE WKLVIPRKH RIQIIREYH 
        DEPTASHFG FFKTFRRVS EEFYWPKMR PDILKYVRA 
        CKVCGSQKS PNQGPYGLM GQEKKVVFP WQMISVDLM 
        GPFPRSKKG NSYLLAITD WLTKYVVLH PLRQATAAP 
        IVRFIEDEI FLVYGVPQI IICDNGTQF AGKTMKALA 
        KNYQVQKLW FTARYHPQA NPVERTNRT IGKAIRSYI 
        KENHRDWDI NIAKIGYAI RTAVHEVTG HSPVFLNFG 
        RKVPISGQF YGKVSAESA DEIQTRGEN ETETAYSEL 
        VRLFATFKK E
      CDS sequence
      • >TC012952 RA
        atggacgct attttcggt ccacaattt gaaccaaat 
        atttttgta tatcttgat gatattatt attacgtca 
        aaaacattt gaagaacat attttgttg ctagaagag 
        gtgcacaaa agattagaa gatgcaaat ctcacaatc 
        aatttaacg aaatgtaaa ttttttaga aaatcactt 
        aaatattta ggctttatt gtcgagggt aatggttta 
        agagcagat ccagacaag gttaaagac atgataaac 
        tatcccaat ccgaaaaca acaactgaa attaaacga 
        tttcaaggt atgtgttcg tggtacaga cgatttatt 
        ccacatttc tcttcactt tgtgctcca ttaaataac 
        ttgataaaa aataaagac aaaggtcaa aaaataata 
        tggacttct gaagctcaa gaagctttc ctgaaaata 
        aaaaatgca ctggtttca gcacctatt ttgaactca 
        ccaaatttt tcacgacca tttattgtg caatgtgat 
        gcatcagac ataggttta ggcgcactt ttattacag 
        gaaattgat ggaatagaa aaaatagtt gcatatgct 
        agcaagaca ctctcgaaa gctgaaaaa aattactca 
        gtcactgaa cgtgaagct ttagctgtg atatttgcc 
        gttgaaaaa tttagaccg ttcatagaa ggtacaaga 
        tttacgatt cctacagac cataattcc cttacatgg 
        ttatttcgt cttaaagaa ccaaccggt agactagct 
        cgttggata gccagatta agtcaattt gatttcgat 
        ttaagacac attaaaggt aaattaaat gtagtaccc 
        gatgctttg tctcgaatt ccgacgcct gatgaaata 
        gcagttctt gatttaaat tttgacaat ttagacaaa 
        tggtatact aatttgaga aataaaatt ttgaaatat 
        ccagacaag tatgttggt tggaaaatc acagatggc 
        aaaatttat aaacatctt tctagtcgc ttagcttta 
        aactgtaat atctcagag tggaaacta gtcataccc 
        cgtaagcat agaattcaa atcattagg gaatatcac 
        gacgagcct acggcaagt cattttgga ttttttaaa 
        acatttcgt cgcgtatca gaagaattt tattggccg 
        aaaatgcgc ccggatatt ttaaaatat gtacgagct 
        tgcaaagtt tgcggctct caaaaatct ccaaatcag 
        ggaccttac ggtttgatg ggtcaggaa aaaaaagtt 
        gtctttccg tggcaaatg atctcggtt gatttaatg 
        ggaccattc cctcgatct aagaaaggt aattcctat 
        ttgcttgca attactgat tggttaact aaatatgta 
        gtattacat ccattacgt caagcgacg gcagcgcca 
        attgttcgt ttcattgaa gacgaaatt tttcttgtt 
        tatggagta ccacagata attatatgc gataacggc 
        actcaattt gctggtaaa actatgaaa gccttggca 
        aaaaattat caagttcaa aagttatgg tttacagcg 
        cgctatcat ccacaagca aacccagtg gagcgcaca 
        aatagaaca ataggtaaa gccatacgt agttatatt 
        aaagaaaat caccgagat tgggatatt aatattgca 
        aagatcggt tacgctatt agaactgct gttcacgag 
        gttactgga cacagtcca gtatttctt aatttcggt 
        cgaaaagtc cccatatcg ggtcaattt tatggtaag 
        gtatcggca gaatcagca gacgaaatt cagactcga 
        ggtgaaaat gagacagag acagcatac tcggagtta 
        gtaagatta ttcgcgacg ttcaaaaaa gagtag
      mRNA sequence
      • >TC012952 RA
        atggacgct attttcggt ccacaattt gaaccaaat 
        atttttgta tatcttgat gatattatt attacgtca 
        aaaacattt gaagaacat attttgttg ctagaagag 
        gtgcacaaa agattagaa gatgcaaat ctcacaatc 
        aatttaacg aaatgtaaa ttttttaga aaatcactt 
        aaatattta ggctttatt gtcgagggt aatggttta 
        agagcagat ccagacaag gttaaagac atgataaac 
        tatcccaat ccgaaaaca acaactgaa attaaacga 
        tttcaaggt atgtgttcg tggtacaga cgatttatt 
        ccacatttc tcttcactt tgtgctcca ttaaataac 
        ttgataaaa aataaagac aaaggtcaa aaaataata 
        tggacttct gaagctcaa gaagctttc ctgaaaata 
        aaaaatgca ctggtttca gcacctatt ttgaactca 
        ccaaatttt tcacgacca tttattgtg caatgtgat 
        gcatcagac ataggttta ggcgcactt ttattacag 
        gaaattgat ggaatagaa aaaatagtt gcatatgct 
        agcaagaca ctctcgaaa gctgaaaaa aattactca 
        gtcactgaa cgtgaagct ttagctgtg atatttgcc 
        gttgaaaaa tttagaccg ttcatagaa ggtacaaga 
        tttacgatt cctacagac cataattcc cttacatgg 
        ttatttcgt cttaaagaa ccaaccggt agactagct 
        cgttggata gccagatta agtcaattt gatttcgat 
        ttaagacac attaaaggt aaattaaat gtagtaccc 
        gatgctttg tctcgaatt ccgacgcct gatgaaata 
        gcagttctt gatttaaat tttgacaat ttagacaaa 
        tggtatact aatttgaga aataaaatt ttgaaatat 
        ccagacaag tatgttggt tggaaaatc acagatggc 
        aaaatttat aaacatctt tctagtcgc ttagcttta 
        aactgtaat atctcagag tggaaacta gtcataccc 
        cgtaagcat agaattcaa atcattagg gaatatcac 
        gacgagcct acggcaagt cattttgga ttttttaaa 
        acatttcgt cgcgtatca gaagaattt tattggccg 
        aaaatgcgc ccggatatt ttaaaatat gtacgagct 
        tgcaaagtt tgcggctct caaaaatct ccaaatcag 
        ggaccttac ggtttgatg ggtcaggaa aaaaaagtt 
        gtctttccg tggcaaatg atctcggtt gatttaatg 
        ggaccattc cctcgatct aagaaaggt aattcctat 
        ttgcttgca attactgat tggttaact aaatatgta 
        gtattacat ccattacgt caagcgacg gcagcgcca 
        attgttcgt ttcattgaa gacgaaatt tttcttgtt 
        tatggagta ccacagata attatatgc gataacggc 
        actcaattt gctggtaaa actatgaaa gccttggca 
        aaaaattat caagttcaa aagttatgg tttacagcg 
        cgctatcat ccacaagca aacccagtg gagcgcaca 
        aatagaaca ataggtaaa gccatacgt agttatatt 
        aaagaaaat caccgagat tgggatatt aatattgca 
        aagatcggt tacgctatt agaactgct gttcacgag 
        gttactgga cacagtcca gtatttctt aatttcggt 
        cgaaaagtc cccatatcg ggtcaattt tatggtaag 
        gtatcggca gaatcagca gacgaaatt cagactcga 
        ggtgaaaat gagacagag acagcatac tcggagtta 
        gtaagatta ttcgcgacg ttcaaaaaa gagtag
      The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY