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Gene information
General information
TC034622 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007418.3: 23392106..23415873
Sequence information
Transcripts / Proteins (2) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC034622
    iBeetle screen iB_07055

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 40.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 2 (9 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 50
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC034622 RA
      MTQDILQKH VKNASDVEY PAYGVTGPN 
      KDASPSGDR RLAQSAQMY HYQHQKQQI 
      IAMERAAAG ERHGSVSEA DSDEENEEG 
      DYTVYECPG LAPTGEMEV KNPLFQDDP 
      TPAQTPPVK PTEEEKK
    • >TC034622 RB
      MTQDILQKH VKNASDVEY PAYGVTGPN 
      KDASPSGDR RLAQSAQMY HYQHQKQQI 
      IAMESRAAA GERHGSVSE ADSDEENEE 
      GDYTVYECP GLAPTGEME VKNPLFQDD 
      PTPAQTPPV KPTEEEKK
    CDS sequence
    • >TC034622 RA
      atgacgcag gacatttta cagaaacat gtgaagaac 
      gcgtcagat gtggaatac ccagcttac ggagtcaca 
      ggacctaat aaggatgca tcaccatca ggcgacaga 
      cgactggct cagtctgca caaatgtat cactaccaa 
      catcagaag cagcaaata atcgcaatg gagagagcc 
      gctgcaggt gaaagacac ggttcagtt tcggaggca 
      gacagcgac gaagaaaat gaagaagga gattacacc 
      gtatacgaa tgtcctggc ttagctccc accggggaa 
      atggaagtg aaaaacccg cttttccaa gacgaccca 
      acaccggcg caaacacca cccgttaag ccaaccgaa 
      gaggaaaag aaataa
    • >TC034622 RB
      atgacgcag gacatttta cagaaacat gtgaagaac 
      gcgtcagat gtggaatac ccagcttac ggagtcaca 
      ggacctaat aaggatgca tcaccatca ggcgacaga 
      cgactggct cagtctgca caaatgtat cactaccaa 
      catcagaag cagcaaata atcgcaatg gagagcaga 
      gccgctgca ggtgaaaga cacggttca gtttcggag 
      gcagacagc gacgaagaa aatgaagaa ggagattac 
      accgtatac gaatgtcct ggcttagct cccaccggg 
      gaaatggaa gtgaaaaac ccgcttttc caagacgac 
      ccaacaccg gcgcaaaca ccacccgtt aagccaacc 
      gaagaggaa aagaaataa
    mRNA sequence
    • >TC034622 RA
      tgaaaagtg gcctttacc acatgacgc aggacattt 
      tacagaaac atgtgaaga acgcgtcag atgtggaat 
      acccagctt acggagtca caggaccta ataaggatg 
      catcaccat caggcgaca gacgactgg ctcagtctg 
      cacaaatgt atcactacc aacatcaga agcagcaaa 
      taatcgcaa tggagagag ccgctgcag gtgaaagac 
      acggttcag tttcggagg cagacagcg acgaagaaa 
      atgaagaag gagattaca ccgtatacg aatgtcctg 
      gcttagctc ccaccgggg aaatggaag tgaaaaacc 
      cgcttttcc aagacgacc caacaccgg cgcaaacac 
      cacccgtta agccaaccg aagaggaaa agaaataaa 
      tcgaccaca aacactatt caatagttt ttaagtcat 
      ccaacttcc tccaatgga tcggtgttt acgtctcta 
      gacactaaa cagcaattc attgcaaaa gttagcaac 
      tggaacttg ggacgagtt tcccaattt tctctagtc 
      actcgtgtg aggacttaa aattattga ataagacca 
      gttgttctt tcagttttt tttccgatt gatttgctt 
      acttttctc ttatgtaca catgtaatc aaaataaat 
      tattttcta gcaaccaca aaggcgttt tctttactc 
      gttcgttga ataattatt ttgataaca cgtgtacgt 
      ttcgattga gtttgctgt tccttcaag actgaggcg 
      aaacaccta aaataggac ataggctaa atgacatat 
      atttttgca aagatttgt tcatcgatt tttgatgat 
      gcttcgtca gccacgttc actatccca gccactttt 
      ctaatgaat ggatgtaaa gagagtgaa gaggactgt 
      acgttttgt atcattca
    • >TC034622 RB
      tgaaaagtg gcctttacc acatgacgc aggacattt 
      tacagaaac atgtgaaga acgcgtcag atgtggaat 
      acccagctt acggagtca caggaccta ataaggatg 
      catcaccat caggcgaca gacgactgg ctcagtctg 
      cacaaatgt atcactacc aacatcaga agcagcaaa 
      taatcgcaa tggagagca gagccgctg caggtgaaa 
      gacacggtt cagtttcgg aggcagaca gcgacgaag 
      aaaatgaag aaggagatt acaccgtat acgaatgtc 
      ctggcttag ctcccaccg gggaaatgg aagtgaaaa 
      acccgcttt tccaagacg acccaacac cggcgcaaa 
      caccacccg ttaagccaa ccgaagagg aaaagaaat 
      aaatcgacc acaaacact attcaatag tttttaagt 
      catccaact tcctccaat ggatcggtg tttacgtct 
      ctagacact aaacagcaa ttcattgca aaagttagc 
      aactggaac ttgggacga gtttcccaa ttttctcta 
      gtcactcgt gtgaggact taaaattat tgaataaga 
      ccagttgtt ctttcagtt ttttttccg attgatttg 
      cttactttt ctcttatgt acacatgta atcaaaata 
      aattatttt ctagcaacc acaaaggcg ttttcttta 
      ctcgttcgt tgaataatt attttgata acacgtgta 
      cgtttcgat tgagtttgc tgttccttc aagactgag 
      gcgaaacac ctaaaatag gacataggc taaatgaca 
      tatattttt gcaaagatt tgttcatcg atttttgat 
      gatgcttcg tcagccacg ttcactatc ccagccact 
      tttctaatg aatggatgt aaagagagt gaagaggac 
      tgtacgttt tgtatcatt ca
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY