General information | |||
TC031524 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007416.3: 4638656..4642181 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs | TC031524 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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* : mandatory fields
Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_06596 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 60.0% (includes death as pupa, adult)
eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 4 (3 dpi)adult lethality - Number of animals showing the phenotype: 2 (9 dpi)
remarks: eggs lost,
remarks: eggs lost,
remarks - cuticles: later than schedule,
8 days later, due to lost eggs in day 9
|
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC031524 RA
MAYKPEGLF EHILIHYRW VFVCLFLLP ASFFFDIWL YVRNWIVFK LSSAPKQHH SKVKHVQTQ VRNWIKNGR KQFMCTARP GWQTVSFRR PKYKKTMYN VEVNLVDVL DINLEKKTV RVEPLVTMG QLTATLNPL GWTIPVVPE LDDLTVGGL VMGTGIESS SHKYGLFQH ICVSYELVL CDGSVVTCS TQENPNLYY SVPWSYGTL GILTAVEIQ LIPAKKYVK LTYKPLKTL DQVTQETES ASKDLNNEF VETLVYSKD KAVLMTGIQ TDQVDENKV NAIGKWYKP WFFKHVEGM LETNKTVVE YIPLRDYYH RHTRSIFWE LQDIIPFGN NLLFRFFLG WIVPPKVSL LKLTQTEAV RKLYENNHV IQDMLVPIE TLKASIEKF HEVLEIYPM WICPFKLPP NPGMVHPPL KNYDTDPVY VDIGVYGVP KAKNFTPLG STREIEKYV SNGNGFQML YADTYMSRE EFRRMFDHR LYDSLRASL GCESAFAEV YDKVSRAAR E
- >TC031524 RA
atggcttac aagccggag ggactcttc gagcacatc ctgattcac tacagatgg gttttcgtt tgtcttttc ctcttgccc gcctctttc tttttcgat atttggctg tacgtccgt aactggatc gttttcaaa ttgagcagt gcccccaaa caacatcat tccaaagtg aaacatgta caaacccag gtaagaaat tggattaag aatggaaga aaacaattt atgtgcaca gccaggcct ggatggcag acagtctcc ttcaggagg cccaaatat aagaagact atgtacaat gttgaagtc aatctagtt gacgtgctt gatattaat ttagagaag aagactgtt cgggttgaa cctttagtc accatgggt cagttaacc gcgactttg aaccctcta ggctggact attccggtg gtaccggag ctcgatgat ttaacagtc ggaggttta gttatgggg actggaata gagtcgtct tcgcacaaa tacggcctc ttccaacac atttgcgtt tcttacgaa ttagttctt tgtgatggt tctgtggta acttgttca actcaagaa aacccaaat ttatactat tcagtacct tggtcgtac ggcactttg ggtatattg acagccgtt gaaattcag ttaatccca gccaaaaaa tacgtcaaa ctgacttac aaaccctta aaaaccctg gatcaagta actcaagag actgaatca gcaagtaaa gacctgaac aacgaattt gtcgaaact ttggtttat agtaaagat aaggcggtg ctcatgacc ggcattcaa accgaccaa gttgacgaa aataaagtg aatgcgatt ggaaaatgg tacaagcct tggtttttc aaacatgtt gaaggcatg ttggaaact aataaaact gtggttgaa tacatcccc ttgcgtgac tattaccac cgacacacg agatctata ttttgggaa cttcaggac attattccc ttcggaaac aacctcctg tttaggttt ttcttgggt tggattgtg cccccaaaa gtctccctt ttaaaactg acccaaact gaagctgtg cgaaaactg tacgagaac aaccacgtc attcaggac atgttagta ccgattgaa accctcaaa gcgagcatc gagaaattt cacgaggtt ctcgagata taccccatg tggatttgc ccttttaag ttaccccca aacccggga atggtgcac cctccccta aaaaactac gatacggac cccgtttac gtcgatatc ggtgtgtac ggggtaccc aaagctaaa aatttcaca ccgcttgga tcgacgaga gagatcgaa aaatacgtc agtaatggc aatggtttc cagatgctg tatgccgac acatacatg tcccgtgag gaatttcgc agaatgttc gaccaccgg ctgtacgac tcgctgagg gcttctctg ggctgcgaa tcggccttc gccgaggtg tacgacaag gtgagcagg gccgctcgg gagtag
- >TC031524 RA
tttatcagt tgggtctgt gaacatggc ttacaagcc ggagggact cttcgagca catcctgat tcactacag atgggtttt cgtttgtct tttcctctt gcccgcctc tttcttttt cgatatttg gctgtacgt ccgtaactg gatcgtttt caaattgag cagtgcccc caaacaaca tcattccaa agtgaaaca tgtacaaac ccaggtaag aaattggat taagaatgg aagaaaaca atttatgtg cacagccag gcctggatg gcagacagt ctccttcag gaggcccaa atataagaa gactatgta caatgttga agtcaatct agttgacgt gcttgatat taatttaga gaagaagac tgttcgggt tgaaccttt agtcaccat gggtcagtt aaccgcgac tttgaaccc tctaggctg gactattcc ggtggtacc ggagctcga tgatttaac agtcggagg tttagttat ggggactgg aatagagtc gtcttcgca caaatacgg cctcttcca acacatttg cgtttctta cgaattagt tctttgtga tggttctgt ggtaacttg ttcaactca agaaaaccc aaatttata ctattcagt accttggtc gtacggcac tttgggtat attgacagc cgttgaaat tcagttaat cccagccaa aaaatacgt caaactgac ttacaaacc cttaaaaac cctggatca agtaactca agagactga atcagcaag taaagacct gaacaacga atttgtcga aactttggt ttatagtaa agataaggc ggtgctcat gaccggcat tcaaaccga ccaagttga cgaaaataa agtgaatgc gattggaaa atggtacaa gccttggtt tttcaaaca tgttgaagg catgttgga aactaataa aactgtggt tgaatacat ccccttgcg tgactatta ccaccgaca cacgagatc tatattttg ggaacttca ggacattat tcccttcgg aaacaacct cctgtttag gtttttctt gggttggat tgtgccccc aaaagtctc ccttttaaa actgaccca aactgaagc tgtgcgaaa actgtacga gaacaacca cgtcattca ggacatgtt agtaccgat tgaaaccct caaagcgag catcgagaa atttcacga ggttctcga gatataccc catgtggat ttgcccttt taagttacc cccaaaccc gggaatggt gcaccctcc cctaaaaaa ctacgatac ggaccccgt ttacgtcga tatcggtgt gtacggggt acccaaagc taaaaattt cacaccgct tggatcgac gagagagat cgaaaaata cgtcagtaa tggcaatgg tttccagat gctgtatgc cgacacata catgtcccg tgaggaatt tcgcagaat gttcgacca ccggctgta cgactcgct gagggcttc tctgggctg cgaatcggc cttcgccga ggtgtacga caaggtgag cagggccgc tcgggagta ggaactgaa gaaaccact ggagctgca ctatttgct ttcggaagt cacggcctg tggccatca tcattccag aaataaaga atgttgaaa aga
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
