| General information | |||
| TC015753 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007421.3: 7436873..7446075 | |
| Sequence information | |||
| Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
||
| Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
| Closest fly homologs | TC015753 | ||
GO terms for Tribolium
-
{{ goTerm.term }} ({{ goTerm.evidence }}){{ goTerm.evidenceTooltip }}{{goTerm.showAll ? '[-]' : '[+]'}}Status: {{ goTerm.status }}
Evidence: {{ goTerm.evidence }} ({{ goTerm.evidenceTooltip }})
Reference: {{ goTerm.referenceText }}
Quotation: {{ goTerm.quotation }}
Submitter: {{ goTerm.name }}
There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
| Gene | {{ goGene }} |
|
|---|---|---|
| GO ID | * {{ blurIdResult }} |
|
| Evidence | {{ blurEvidenceResult }} |
|
| Reference | * {{ blurReferenceResult }} |
|
| Quotation | ||
| Name | ||
| Publish name | ||
| {{ unavailableText }} |
* : mandatory fields
Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
| General information | ||||
| iB_06355 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
||
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 30.0% (includes death as pupa, adult)
eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
| All larvae on slide hatched, show no specific defects. |
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 60.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 100.0% (includes death as larva, prepupa, pupa, adult)
pupal molt delayed (still larva) - Number of animals showing the phenotype: 4 (11 dpi)
larva lethality late (L7) - Number of animals showing the phenotype: 4 (16 dpi)
- >TC015753 RA
MGVPKPQQR FYTPSSHPF NNNYMFNGD IASHSITGF YKNAKIFIT GATGFVDKA LVEKLLRTC DELDSLYLL MRPKRGMNI EQRLKELLK NPVFNRIRE KNPDAFDKV KAVAGDVSA PNLGLSDGD KEKLVEHCN IVFHSAATV KFNEDLKNA VTLNTLGTK QVLELCREM KNLKSFVHV STAYSNSDK YTVDETVYE PPHDPNAVI NSIKVLPNE GIEILSKKI LGKHPNTYT LTKAMAEHL VLESSSQIP AAVVRPSII TAAWKEPYP GWVDNVSGI TGIFMECGR GTIKSIICD DKCTMDLIP VDIVVNTII TAAWHTAAH PSNTMRVYN CTSGTTNPI SWKEFGRLT QKYWLEYPS KYVTWYPGF TYRTSRAMH VICAHLFHL LPSAFLDVF LYCTKQKPI MLKISRKFY SALDAGKFF STNEWDFKT STMAALVSA VRDAEDGAN FEIDMTAEN GFNWNFYLK DFTLGVRQY VLKDDISSL PSAKVKLNR LYWFQKVFQ AVTIYSIVK LALHQCT
- >TC015753 RA
atgggcgtc ccaaaaccg cagcaacgt ttctacacc ccctcgtcc caccccttc aacaacaac tacatgttc aacggtgac atcgcctcc cacagcatc accggattc tacaaaaac gcgaaaatc ttcatcacc ggagccacc ggattcgtg gacaaagcc ctcgtcgag aaactcctc cgaacatgc gacgaactc gacagtctt tatctttta atgcgacca aaacgcgga atgaacatc gaacagaga ttgaaggaa ttgctgaaa aacccagtt tttaaccgg attcgtgaa aaaaatccg gacgctttt gacaaagtc aaggccgtg gcgggggat gtttcagcc cccaatttg gggctgtca gatggggac aaggagaag ctggtcgag cactgcaat atcgttttc cattcagcg gccacagtc aaattcaac gaggatttg aaaaacgcc gtcaccctc aacaccttg ggcaccaaa caagtgctc gaactttgt cgagagatg aagaatttg aaaagtttc gtccacgtc tccacagct tacagcaat tcagacaag tacacggtt gacgaaacg gtgtatgaa cccccacat gaccccaac gcagtcatt aatagcatc aaagttttg ccaaacgaa ggaatcgaa atcttatca aaaaaaatc ttgggcaaa cacccaaac acctacacc ttgaccaag gcaatggcc gagcatttg gtccttgag agctcttcc cagatacca gcagctgtg gtacgccct tccatcatt acagccgca tggaaggaa ccataccca ggatgggtg gataacgtc agtgggatc acggggatt ttcatggaa tgtggtcga gggaccatc aagtcgatc atttgcgac gacaaatgt accatggac ttgatcccg gtcgatatc gtggtcaat accatcatc acggcggct tggcacacg gccgcacac ccatcgaac accatgcgg gtctacaac tgtaccagc ggtaccacc aaccccatt tcatggaag gagttcggc cgcttgacc cagaagtac tggctagag taccccagc aagtacgtc acgtggtac ccgggattc acctatcgc acaagccgc gccatgcac gtgatctgc gcccacttg ttccatttg ctgccctcg gccttcctt gatgtgttt ttgtattgc acgaaacaa aagccaata atgttgaaa atcagccga aagttctac agtgcgtta gatgcgggt aaatttttt tcaaccaac gaatgggat tttaagact tcgacgatg gcagcactg gtcagcgcc gtccgcgat gcagaagat ggcgccaat tttgaaatt gatatgaca gcggagaac ggcttcaat tggaacttc taccttaag gattttacc ctaggagtg agacagtac gtgctcaag gacgacatt agcagtcta ccaagtgcc aaagtcaaa ctaaacagg ttgtattgg ttccaaaag gtgttccaa gctgtcacg atatactct atagtcaaa ttggcactt catcaatgc acttag
- >TC015753 RA
gtgcggcag tttccgcaa aagtggggc acccagacc agcatcagt tcattgtgg gcttgtaga cgattcggt tcaaaaaaa tgacagttt gaggcttta agtgcaaaa ttcaagtgg accaaaatc agggacaac acaaaaaat gggcgtccc aaaaccgca gcaacgttt ctacacccc ctcgtccca ccccttcaa caacaacta catgttcaa cggtgacat cgcctccca cagcatcac cggattcta caaaaacgc gaaaatctt catcaccgg agccaccgg attcgtgga caaagccct cgtcgagaa actcctccg aacatgcga cgaactcga cagtcttta tcttttaat gcgaccaaa acgcggaat gaacatcga acagagatt gaaggaatt gctgaaaaa cccagtttt taaccggat tcgtgaaaa aaatccgga cgcttttga caaagtcaa ggccgtggc gggggatgt ttcagcccc caatttggg gctgtcaga tggggacaa ggagaagct ggtcgagca ctgcaatat cgttttcca ttcagcggc cacagtcaa attcaacga ggatttgaa aaacgccgt caccctcaa caccttggg caccaaaca agtgctcga actttgtcg agagatgaa gaatttgaa aagtttcgt ccacgtctc cacagctta cagcaattc agacaagta cacggttga cgaaacggt gtatgaacc cccacatga ccccaacgc agtcattaa tagcatcaa agttttgcc aaacgaagg aatcgaaat cttatcaaa aaaaatctt gggcaaaca cccaaacac ctacacctt gaccaaggc aatggccga gcatttggt ccttgagag ctcttccca gataccagc agctgtggt acgcccttc catcattac agccgcatg gaaggaacc atacccagg atgggtgga taacgtcag tgggatcac ggggatttt catggaatg tggtcgagg gaccatcaa gtcgatcat ttgcgacga caaatgtac catggactt gatcccggt cgatatcgt ggtcaatac catcatcac ggcggcttg gcacacggc cgcacaccc atcgaacac catgcgggt ctacaactg taccagcgg taccaccaa ccccatttc atggaagga gttcggccg cttgaccca gaagtactg gctagagta ccccagcaa gtacgtcac gtggtaccc gggattcac ctatcgcac aagccgcgc catgcacgt gatctgcgc ccacttgtt ccatttgct gccctcggc cttccttga tgtgttttt gtattgcac gaaacaaaa gccaataat gttgaaaat cagccgaaa gttctacag tgcgttaga tgcgggtaa atttttttc aaccaacga atgggattt taagacttc gacgatggc agcactggt cagcgccgt ccgcgatgc agaagatgg cgccaattt tgaaattga tatgacagc ggagaacgg cttcaattg gaacttcta ccttaagga ttttaccct aggagtgag acagtacgt gctcaagga cgacattag cagtctacc aagtgccaa agtcaaact aaacaggtt gtattggtt ccaaaaggt gttccaagc tgtcacgat atactctat agtcaaatt ggcacttca tcaatgcac ttagcccaa tttttccat ttttgactc gttatagga gaattaagt gtcttatcg agaaatcga gtatcacca aacggcgga caaaccatg caaatgaca aattttagg ataggttat tgaatatct tactttatt tattctagt tttatagca ctaacatgt atttttcaa ctggaaaag gtttatgtt gataataaa atttgtatc actgg
