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Gene information
General information
TC015756 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007421.3: 7466480..7474941
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC015756
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes


    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
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    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
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    Name
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    Email
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    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_05889

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 1 (3 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 40.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: -1.0% (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC015756 RA
      MSVNTILMD FSVDPSAVK NDSQVSVVS SNIENVLRE 
      YLANLKTLT TIRLETDVL RLYSSDGGL SATLRIFNT 
      GLITLNIEY LKGESQEAL LSFERCREL DRDLVERVV 
      GIHRSQALV PIKRGTFKR YYPTSDDRL LEYDIDELV 
      FEERTPYQK IQIVHSKSL GNMLVLDDL QNISEADLI 
      YTETLMGRG IENYKDKEI VILGGGDGA LLYELLKEK 
      PKEVIMLEI DEVVMKACA KHMRSICGD VLDKMSGPN 
      YEIIVGDCV KAIEQYIKE GRKFDYVFG DLTDVPLSE 
      APTGELWDF INKILSLSF KILKPDGKF MTHVIGSAA 
      GDALKMYET QLMKLQPPV KFTTSHAFV PSFLEDWVF 
      YQVFFDKKQ
    CDS sequence
    • >TC015756 RA
      atgtcggtg aatacgatt ttgatggac ttttctgtg 
      gatccgtcc gccgttaaa aacgactct caagtgtcc 
      gtagtgtct tcaaacatt gaaaacgtc ctgcgcgag 
      tacctcgcc aatttgaaa accttgacc acaattcgg 
      ctggaaacg gacgttttg cggttatat tcgagcgat 
      ggggggctg tcggccact ctgcgcatc ttcaacact 
      ggtctcata acgctcaac atcgagtac ctgaaaggg 
      gagtcccag gaggcgctc ctcagcttc gagcggtgc 
      agagagctt gatcgggat ttagtcgag cgtgtggtc 
      ggaatacac aggagtcag gccttagtc cctatcaaa 
      aggggcacc ttcaagagg tactatccc acctcagac 
      gatcgcttg ctcgaatat gacattgat gagctagtt 
      tttgaggag agaacgccc tatcagaaa atacaaatc 
      gtgcattcg aaaagtttg ggaaatatg ctggtttta 
      gatgatcta caaaacata tccgaggcc gatttaatc 
      tacaccgag acactaatg gggcgcggc atcgaaaat 
      tacaaagac aaagaaatc gtgattttg ggcgggggc 
      gatggggcc ttactttac gaacttttg aaagagaaa 
      ccaaaagaa gtcataatg cttgaaatc gacgaagtt 
      gtgatgaaa gcgtgtgcc aagcacatg cgatcgatc 
      tgtggggac gtccttgac aaaatgtcg gggcccaac 
      tatgagatc attgtgggc gattgtgtg aaagcgatc 
      gagcagtac atcaaagag ggccgaaag ttcgattac 
      gtgttcggc gacctgacc gacgtgccc ctttcggaa 
      gcccccacg ggggaattg tgggatttc atcaataaa 
      atcctaagt ctttcgttc aaaatcctg aaacccgac 
      gggaaattc atgacacat gtgatcggg tcagcggcc 
      ggggacgcc ctcaaaatg tacgaaacg cagctgatg 
      aagttacaa ccgccggtt aagttcacc acttcgcac 
      gctttcgtc ccttcgttc ctcgaagat tgggtcttt 
      taccaagtg tttttcgac aagaagcaa taa
    mRNA sequence
    • >TC015756 RA
      tacggcttt aatatttga aaatgttgg atttgacga 
      taatgaggg tcaaaattg ggttttaat tgtccaaaa 
      tcgggtaaa atcgccaca aaacccaga aatagttgg 
      tgctttttg tgcgtttgg ttggcagcg tgggttcct 
      attttgaca tttccgcgc acgatttct tggttaggt 
      ctgaaaaac cggcgtttt tcttcgaat tttttccca 
      aaacggcaa aatgtcggt gaatacgat tttgatgga 
      cttttctgt ggatccgtc cgccgttaa aaacgactc 
      tcaagtgtc cgtagtgtc ttcaaacat tgaaaacgt 
      cctgcgcga gtacctcgc caatttgaa aaccttgac 
      cacaattcg gctggaaac ggacgtttt gcggttata 
      ttcgagcga tggggggct gtcggccac tctgcgcat 
      cttcaacac tggtctcat aacgctcaa catcgagta 
      cctgaaagg ggagtccca ggaggcgct cctcagctt 
      cgagcggtg cagagagct tgatcggga tttagtcga 
      gcgtgtggt cggaataca caggagtca ggccttagt 
      ccctatcaa aaggggcac cttcaagag gtactatcc 
      cacctcaga cgatcgctt gctcgaata tgacattga 
      tgagctagt ttttgagga gagaacgcc ctatcagaa 
      aatacaaat cgtgcattc gaaaagttt gggaaatat 
      gctggtttt agatgatct acaaaacat atccgaggc 
      cgatttaat ctacaccga gacactaat ggggcgcgg 
      catcgaaaa ttacaaaga caaagaaat cgtgatttt 
      gggcggggg cgatggggc cttacttta cgaactttt 
      gaaagagaa accaaaaga agtcataat gcttgaaat 
      cgacgaagt tgtgatgaa agcgtgtgc caagcacat 
      gcgatcgat ctgtgggga cgtccttga caaaatgtc 
      ggggcccaa ctatgagat cattgtggg cgattgtgt 
      gaaagcgat cgagcagta catcaaaga gggccgaaa 
      gttcgatta cgtgttcgg cgacctgac cgacgtgcc 
      cctttcgga agcccccac gggggaatt gtgggattt 
      catcaataa aatcctaag tctttcgtt caaaatcct 
      gaaacccga cgggaaatt catgacaca tgtgatcgg 
      gtcagcggc cggggacgc cctcaaaat gtacgaaac 
      gcagctgat gaagttaca accgccggt taagttcac 
      cacttcgca cgctttcgt cccttcgtt cctcgaaga 
      ttgggtctt ttaccaagt gtttttcga caagaagca 
      ataaccgag catttccaa cttgtagtg tgtagttat 
      tagtaggaa aaatattgt atataaaca cagtgcatg 
      cgtatacca aaaattatt ttccgttca gttggctat 
      ttttgtaac tcctggatt gactcgaat aaattactt 
      tccgaaca
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY