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Gene information
General information
TC015364 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007421.3: 11802..13224
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC015364
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes


    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
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    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
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    Email
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    Publish name
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_05804

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 100.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 1 (3 dpi)
    Days post injection


    adult lethality immediately after eclosion - Number of animals showing the phenotype: 1 (3 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 2 (9 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 6 (11 dpi)
    Days post injection


    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: -1.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: -1.0% (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC015364 RA
      MSETGGKAP VSVIVLGMA GSGKTCLVT RLSNSPKKP 
      YVVNLDPAC FNLPYFANI DIRDTVNYK EVMKQYKLG 
      PNGAIVTSL NLFSTKFSE VIGFIEKSN HDLCILDTP 
      GQIEVFTWS VSGSIITET LASTLPTII LYVVDCVRS 
      TSPVTFMSN MLYACSILY KTRLPFIVV MNKVDIVDH 
      SYAVDWMTD FESFQQALE AADDESYIS NLTRSMALT 
      LDEFYRNLK VCGVSAATG QGLEDLYKL IDEARILYE 
      TEYRSEWLK IKQQSEAQK LEKSKNNEQ CFTLSAGAE 
      LSDVFLRHP GNDSSEDSE GEEQAAPYQ QNVDNEKED 
      DVFKKVLQQ QREMQVKRA KEAEMKKHQ T
    CDS sequence
    • >TC015364 RA
      atgtccgaa acggggggc aaagctccc gtgagtgta 
      atagtgctt ggaatggcc ggttctggc aaaacttgt 
      cttgttact cgcttatca aattctccg aaaaaaccg 
      tacgttgtg aatttggac cctgcttgt ttcaattta 
      ccctatttc gctaatatt gatattaga gatacggta 
      aattacaag gaggttatg aagcagtac aaattaggc 
      cctaatggt gctatcgtc acaagtttg aacttattt 
      tcaacgaaa ttctctgaa gtgattggt tttattgaa 
      aagtcgaat catgatttg tgcattttg gatactcct 
      ggtcaaatt gaggtgttt acttggtcg gtttcgggt 
      tcgattatt accgaaact ttggcttca actttacca 
      acaatcatt ttatacgtt gttgattgt gtgcgaagt 
      acttctcct gttacgttt atgtcaaac atgctttac 
      gcttgctcg attttgtat aaaacgcgt cttcctttc 
      attgttgtt atgaataaa gttgatatc gttgatcat 
      tcatatgct gttgattgg atgaccgat tttgagtcg 
      tttcaacaa gcacttgaa gctgctgac gacgaaagc 
      tacatcagc aatttgacg aggtctatg gctttaaca 
      ttggatgag ttttaccga aatttaaaa gtttgtgga 
      gtaagcgct gccacagga caaggactt gaagattta 
      tataaacta atagacgaa gctaggatt ttatacgaa 
      actgaatat agaagcgaa tggttgaaa ataaaacaa 
      caatcagaa gcacaaaaa ttggaaaaa tcgaaaaat 
      aatgaacaa tgttttacg ttgtcggct ggggccgaa 
      ttgtctgat gtttttcta agacatcca ggtaatgac 
      agtagtgaa gactctgag ggtgaagaa caggcggct 
      ccatatcaa caaaatgtt gataatgaa aaagaagac 
      gatgtgttt aaaaaagtg ctacaacaa caaagagaa 
      atgcaagtg aaaagggca aaagaagca gagatgaag 
      aaacaccaa acctag
    mRNA sequence
    • >TC015364 RA
      atttgcaaa gattgtttg aacctaaat acacagctt 
      ctgttccaa ctgtcaaat gtcatgaag ctaaccaaa 
      ctttttttc cactttatt ttatgaaaa atgtccgaa 
      acggggggc aaagctccc gtgagtgta atagtgctt 
      ggaatggcc ggttctggc aaaacttgt cttgttact 
      cgcttatca aattctccg aaaaaaccg tacgttgtg 
      aatttggac cctgcttgt ttcaattta ccctatttc 
      gctaatatt gatattaga gatacggta aattacaag 
      gaggttatg aagcagtac aaattaggc cctaatggt 
      gctatcgtc acaagtttg aacttattt tcaacgaaa 
      ttctctgaa gtgattggt tttattgaa aagtcgaat 
      catgatttg tgcattttg gatactcct ggtcaaatt 
      gaggtgttt acttggtcg gtttcgggt tcgattatt 
      accgaaact ttggcttca actttacca acaatcatt 
      ttatacgtt gttgattgt gtgcgaagt acttctcct 
      gttacgttt atgtcaaac atgctttac gcttgctcg 
      attttgtat aaaacgcgt cttcctttc attgttgtt 
      atgaataaa gttgatatc gttgatcat tcatatgct 
      gttgattgg atgaccgat tttgagtcg tttcaacaa 
      gcacttgaa gctgctgac gacgaaagc tacatcagc 
      aatttgacg aggtctatg gctttaaca ttggatgag 
      ttttaccga aatttaaaa gtttgtgga gtaagcgct 
      gccacagga caaggactt gaagattta tataaacta 
      atagacgaa gctaggatt ttatacgaa actgaatat 
      agaagcgaa tggttgaaa ataaaacaa caatcagaa 
      gcacaaaaa ttggaaaaa tcgaaaaat aatgaacaa 
      tgttttacg ttgtcggct ggggccgaa ttgtctgat 
      gtttttcta agacatcca ggtaatgac agtagtgaa 
      gactctgag ggtgaagaa caggcggct ccatatcaa 
      caaaatgtt gataatgaa aaagaagac gatgtgttt 
      aaaaaagtg ctacaacaa caaagagaa atgcaagtg 
      aaaagggca aaagaagca gagatgaag aaacaccaa 
      acctagtag gtaatttat taaataaaa ggaaaaaat 
      atagaaaac aacaattaa aattttatt cacttgaaa 
      ctagaaata aattacaat aaattattc agatcgtt
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY