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Gene information
General information
TC014563 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007420.3: 11789921..11790995
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC014563
    iBeetle screen iB_05652

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 60.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 4 (9 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 30.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 40.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 3 (11 dpi)
    Days post injection


    eclosion delayed (still pupa) - Number of animals showing the phenotype: 1 (16 dpi)
    Days post injection


    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC014563 RA
      MEVEMSEEE LLKKHKQER KDLQAKIQS LKKSVTKGD 
      KKKKKEVTE EIARLEQEL ETKHSSELG SLKPVTEEQ 
      IPEDSETAD DPEAPNEDN QPVRVSRAG RRRNKKAQE 
      EREREKRIQ EQAEKNKEG PRMTEMNAI KEVLAKMGL 
      QLFNIPADG NCLYCAVNH QLVSTGREA YTVPKLRKL 
      TAEFMKENK EEFLPFMYN ESDETVSEE YFESYCKEV 
      ATTKLWGGQ LELRALSNV LKCPIKVIQ ANGPPTLQG 
      ENFEGPELI LAYHRHLYR LGEHYNSTI VLKDEEEK
    CDS sequence
    • >TC014563 RA
      atggaggtg gaaatgagc gaagaagag ctcctcaag 
      aaacacaag caggaacgc aaagacctc caggcgaaa 
      atccagtcg ttgaaaaaa agtgtgaca aaaggcgat 
      aaaaagaag aaaaaagaa gtgactgaa gaaatcgcc 
      cgccttgag caggaactt gaaactaaa cactcctcc 
      gaacttgga tcattaaaa ccagtcact gaggaacaa 
      atccctgaa gattcggag actgctgat gatcccgaa 
      gcacccaat gaagacaat caaccggtt cgagtgtcg 
      cgagccggt cgccgacgc aataaaaag gctcaagag 
      gaacgtgaa cgtgagaaa cgcattcag gagcaagcc 
      gagaagaat aaagagggg cccagaatg acggaaatg 
      aacgcgatt aaagaagtt ttggccaaa atggggcta 
      cagttgttt aatattcct gccgatggg aattgtcta 
      tattgtgcg gtcaatcat cagttggtc tcgacgggg 
      agggaagct tacaccgtg ccgaaatta cgcaaatta 
      acagcagag tttatgaaa gagaataaa gaagagttt 
      ttgcctttt atgtataat gagtcggat gaaacagtt 
      agtgaagag tattttgaa tcgtattgc aaggaagtg 
      gccacgacc aagctatgg gggggccaa ctggaactc 
      agggcgtta tctaatgtt ttaaagtgc cccatcaag 
      gttatacaa gcaaatggg cccccaacg ttacagggg 
      gagaatttc gaggggccg gagttaatt ttagcctac 
      cacagacat ttataccgg ttaggtgaa cactacaat 
      tccactatt gtgctgaaa gatgaagaa gaaaaataa
    mRNA sequence
    • >TC014563 RA
      ctgacagtt ctaacctca aaatcgttt ccatttttc 
      cggctggat tttctccga tttttcact taaaatgga 
      ggtggaaat gagcgaaga agagctcct caagaaaca 
      caagcagga acgcaaaga cctccaggc gaaaatcca 
      gtcgttgaa aaaaagtgt gacaaaagg cgataaaaa 
      gaagaaaaa agaagtgac tgaagaaat cgcccgcct 
      tgagcagga acttgaaac taaacactc ctccgaact 
      tggatcatt aaaaccagt cactgagga acaaatccc 
      tgaagattc ggagactgc tgatgatcc cgaagcacc 
      caatgaaga caatcaacc ggttcgagt gtcgcgagc 
      cggtcgccg acgcaataa aaaggctca agaggaacg 
      tgaacgtga gaaacgcat tcaggagca agccgagaa 
      gaataaaga ggggcccag aatgacgga aatgaacgc 
      gattaaaga agttttggc caaaatggg gctacagtt 
      gtttaatat tcctgccga tgggaattg tctatattg 
      tgcggtcaa tcatcagtt ggtctcgac ggggaggga 
      agcttacac cgtgccgaa attacgcaa attaacagc 
      agagtttat gaaagagaa taaagaaga gtttttgcc 
      ttttatgta taatgagtc ggatgaaac agttagtga 
      agagtattt tgaatcgta ttgcaagga agtggccac 
      gaccaagct atggggggg ccaactgga actcagggc 
      gttatctaa tgttttaaa gtgccccat caaggttat 
      acaagcaaa tgggccccc aacgttaca gggggagaa 
      tttcgaggg gccggagtt aattttagc ctaccacag 
      acatttata ccggttagg tgaacacta caattccac 
      tattgtgct gaaagatga agaagaaaa ataaaacac 
      tgccaaacg taagaagcc aggttttta attataata 
      agcgccaaa atggtacga acaggcgta aaaaggatt 
      aacagctgt aaagtgaaa cttttgtaa tgacgaagg 
      attattata aatgatttt taaacaatt aatt
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY