Status
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Gene information
General information
TC014542 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007420.3: 11372241..11394025
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    		TC014542
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes

    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
    {{ goGene }}
    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
    {{ blurReferenceResult }}
    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
    You may enter your name. The contact information can help us to clarify any questions. If you agree, we may show your name on this page to honor your contribution.
    Email
    We will use your email address only for possible questions regarding this annotation. We will never show your address or give it away.
    Publish name
    If you have entered your name and agree by marking the checkbox. we might show your name on this page to honor your contribution.
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_05648

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 60.0% (includes death as pupa, adult)

    eclosion not fulfilled (died as pupa) - Number of animals showing the phenotype: 1 (3 dpi)
    Days post injection

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)
    Days post injection

    adult lethality - Number of animals showing the phenotype: 3 (9 dpi)
    Days post injection

    Analysis of embryonic musculature and early development
    number of eggs/embryos/larvae on slide: > 50 embryo/egg with embryonic tissue, no cuticle, no fluorescence - Penetrance (percentage of animals/eggs on slide): less than 30%

    embryo/egg not developed/not fertilized - Penetrance (percentage of animals/eggs on slide): less than 30%
    embryo/egg with embryonic tissue, no cuticle, but muscle fluorescence - Penetrance (percentage of animals/eggs on slide): less than 30%

    larval musculature pattern irregular - Penetrance (percentage of animals/eggs on slide): 50% - 80%

    affected eggs/embryos/larvae total percentage of affected eggs/embryos/larvae on slide - Penetrance (percentage of animals/eggs on slide): more than 80%
    remarks: muscle pattern potentially obscured by segmentation defect,
    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 50
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 80.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 100.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 6 (11 dpi)
    Days post injection

    pupal molt delayed (still larva) - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection

    pupal molt not fulfilled (died as prepupa) - Number of animals showing the phenotype: 2 (11 dpi)
    Days post injection

    pupal molt delayed (still larva) - Number of animals showing the phenotype: 1 (16 dpi)
    Days post injection

    eclosion delayed (still pupa) - Number of animals showing the phenotype: 1 (16 dpi)
    Days post injection

    pupal molt not fulfilled (died as L7 or prepupa) - Number of animals showing the phenotype: 1 (19 dpi)
    Days post injection

    eclosion not fulfilled (died as pupa) - Number of animals showing the phenotype: 1 (19 dpi)
    Days post injection

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC014542 RA
      MAAVSNGRS AMDSQSETQ NVVVDRLKR LYPAVNEEK 
SPLPRAWSP KEKYNYIGL SQNNLRVHY KGHGKTHRD 
AASVQATHP IPAACGLYY FEVKIVSKG RDGYMGIGL 
SAQGVNMNR LPGWDKQSY GYHGDDGHS FCSSGTGQP 
YGPTFTTGD VIGCGVNLI DNTCFYTKN GHHLGTAFT 
DLPPNLYPT VGLQTPGEV VDANFGQEP FVFDIEDMM 
RELGTRTRM EINDFPVPE SHGEWQAIL NKMVSTYLV 
HHGYCNTAE AFAHITEQP FNEDIVSIK NRQKILKLV 
LAGRMGEAI ERTSRLYPG LLESNQNLL FMLKCRQFV 
EMVNGSDVE VCHRKSGYS PSYSVSPRP SSPIQTSVI 
QSTKSYSNK SKQSVEEMN QNNTTPTHN GNSCREVPV 
ILADDGDVE MDTTEEFRN GHGDACNGK SNSSTNGYQ 
NGNSHSNNV TQDDGCCDN EDEDMEVDV PVCRKSCSK 
PAVERILEF GRELYSMSQ RLTVDKNSS ETNQKMLED 
AFSLLAYSN PWASPVGWQ LQPSQRESV CASLNSAIL 
ESNKKPRKP PLEVAIAHA HELVKLMST AGLGSCAFA 
SLVDILDQ
    CDS sequence
    • >TC014542 RA
      atggccgcc gtgagtaat ggtcggagt gcgatggat 
tctcaatca gaaacgcag aatgtcgtg gtggaccgt 
ttaaaaaga ctgtatccg gccgtaaac gaggagaag 
tcgccgttg ccccgcgcc tggagcccc aaggaaaag 
tacaactac atcggactg tcccagaac aatttacgc 
gttcattac aaagggcac ggcaaaacc caccgagat 
gccgcaagc gtccaagcg acgcatccc attcctgcc 
gcctgcggc ctttactac ttcgaagtg aagatcgta 
agcaaaggt cgcgacggc tacatgggc atcggtctc 
tcagcccaa ggcgtgaac atgaaccga ttgccaggc 
tgggacaaa caatcgtac ggttatcac ggcgacgac 
ggccattcg ttctgctcg tctggcacc ggccagccg 
tacggaccg acctttacg acaggagac gtcatcggt 
tgcggcgtc aacctcatc gataacacg tgcttttac 
acgaaaaac ggacaccac ctcggtacc gccttcaca 
gatttgcct ccgaatttg tacccaacg gtgggtctt 
caaactcct ggagaagtg gtcgatgcg aacttcgga 
caagaaccg ttcgttttc gacatcgag gacatgatg 
agggagctg gggacgagg acaagaatg gaaatcaac 
gattttcca gtaccagaa agtcacggt gaatggcaa 
gccattctg aacaagatg gtatcaact tatctcgtc 
catcacggt tattgcaat acagcagag gccttcgcc 
cacatcaca gaacaacct tttaacgaa gacatagta 
tcaattaag aatcgacaa aaaattcta aagttagtg 
ttagccggt agaatgggc gaagcgatc gagcgaacg 
agccgactg taccccggc ctgttagag tcaaatcag 
aatctctta tttatgctc aaatgtcgc cagtttgtc 
gaaatggta aatggttca gacgtggag gtctgtcat 
cgaaaaagt ggttattcg ccgtcgtat tcggtatcg 
cctagacct agtagtccc atccaaact tcagttata 
caatcgact aaaagttat agcaataaa tcgaaacaa 
agcgttgaa gaaatgaat caaaacaat acaacgccg 
acacataat ggtaatagt tgtagagaa gttcccgta 
atactcgca gacgatggc gacgtcgaa atggacacc 
accgaagag ttccgaaat ggtcacgga gacgcctgc 
aatggcaag tcaaatagt tcgaccaac gggtaccaa 
aatggtaat agccatagt aataacgtc actcaggat 
gacggttgc tgtgataat gaagacgaa gatatggag 
gttgatgtg ccagtgtgc cggaagtca tgttcaaag 
ccggcagtc gaacgaatt ctagaattt ggtagggaa 
ttatatagt atgagccaa cgattgaca gtagacaag 
aattctagt gagacaaat caaaaaatg ttggaagat 
gcatttagt ttattagca tactcaaac ccatgggcg 
agtcccgtg ggttggcaa ttgcagccc tcgcaaaga 
gagtcggtt tgtgcttcc cttaactca gccatttta 
gaatcaaat aaaaagccc cgaaaaccg cctttagaa 
gtcgcaatc gcgcacgcc catgaactg gtaaagctg 
atgtccacg gcgggactc ggctcgtgt gccttcgcc 
tcgttagtc gacatcttg gatcagtga
    mRNA sequence
    • >TC014542 RA
      taagtcagt acagattcg gcgtcgctg ttaccacag 
caacgaaat cgcgttgcg cgtagtaac caaaattgt 
gacatctat cagctgagc gtgtaagct ctttggtgg 
cgctgtccg agtatgcgc ttcgtggtt cccctacag 
aagggaaag ggagtttag aaatggccg ccgtgagta 
atggtcgga gtgcgatgg attctcaat cagaaacgc 
agaatgtcg tggtggacc gtttaaaaa gactgtatc 
cggccgtaa acgaggaga agtcgccgt tgccccgcg 
cctggagcc ccaaggaaa agtacaact acatcggac 
tgtcccaga acaatttac gcgttcatt acaaagggc 
acggcaaaa cccaccgag atgccgcaa gcgtccaag 
cgacgcatc ccattcctg ccgcctgcg gcctttact 
acttcgaag tgaagatcg taagcaaag gtcgcgacg 
gctacatgg gcatcggtc tctcagccc aaggcgtga 
acatgaacc gattgccag gctgggaca aacaatcgt 
acggttatc acggcgacg acggccatt cgttctgct 
cgtctggca ccggccagc cgtacggac cgaccttta 
cgacaggag acgtcatcg gttgcggcg tcaacctca 
tcgataaca cgtgctttt acacgaaaa acggacacc 
acctcggta ccgccttca cagatttgc ctccgaatt 
tgtacccaa cggtgggtc ttcaaactc ctggagaag 
tggtcgatg cgaacttcg gacaagaac cgttcgttt 
tcgacatcg aggacatga tgagggagc tggggacga 
ggacaagaa tggaaatca acgattttc cagtaccag 
aaagtcacg gtgaatggc aagccattc tgaacaaga 
tggtatcaa cttatctcg tccatcacg gttattgca 
atacagcag aggccttcg cccacatca cagaacaac 
cttttaacg aagacatag tatcaatta agaatcgac 
aaaaaattc taaagttag tgttagccg gtagaatgg 
gcgaagcga tcgagcgaa cgagccgac tgtaccccg 
gcctgttag agtcaaatc agaatctct tatttatgc 
tcaaatgtc gccagtttg tcgaaatgg taaatggtt 
cagacgtgg aggtctgtc atcgaaaaa gtggttatt 
cgccgtcgt attcggtat cgcctagac ctagtagtc 
ccatccaaa cttcagtta tacaatcga ctaaaagtt 
atagcaata aatcgaaac aaagcgttg aagaaatga 
atcaaaaca atacaacgc cgacacata atggtaata 
gttgtagag aagttcccg taatactcg cagacgatg 
gcgacgtcg aaatggaca ccaccgaag agttccgaa 
atggtcacg gagacgcct gcaatggca agtcaaata 
gttcgacca acgggtacc aaaatggta atagccata 
gtaataacg tcactcagg atgacggtt gctgtgata 
atgaagacg aagatatgg aggttgatg tgccagtgt 
gccggaagt catgttcaa agccggcag tcgaacgaa 
ttctagaat ttggtaggg aattatata gtatgagcc 
aacgattga cagtagaca agaattcta gtgagacaa 
atcaaaaaa tgttggaag atgcattta gtttattag 
catactcaa acccatggg cgagtcccg tgggttggc 
aattgcagc cctcgcaaa gagagtcgg tttgtgctt 
cccttaact cagccattt tagaatcaa ataaaaagc 
cccgaaaac cgcctttag aagtcgcaa tcgcgcacg 
cccatgaac tggtaaagc tgatgtcca cggcgggac 
tcggctcgt gtgccttcg cctcgttag tcgacatct 
tggatcagt gacctctct cgtcgccct tctgcatta 
taatgcact gactgccat tctcttcag agagacgat 
ctaactggt tgcatcatt gtccaagaa gaggaacag 
cttacttat tcccaatag ttaacagtt gcagttaaa 
ttatcgcta ttggcagag agaatcgat ggtcggttt 
agcaaacgg atggcgatc agtttcaat cacaaaatg 
tggatcaca attcaaacc aataaatta ctgataatt 
gtgtcgttt tacttcgcc gcttattgg agagagttt 
atttcgtat cacaatcgg ttagagagg aagtcgtgt 
attttccgt tctggattt atttgtttg ttatttggt 
tttatgtct ttgattggc taatttaag gaaacctta 
cattttata tgttttgtt gtagtttta ttaatttaa 
cgtaaataa acataaagt cacttaaca aataatcta 
atctgagtt ctagatgat tttgttgtt gtttggggc 
gttaagaat tttttgcca agagactac gaggtgttt 
ttatcaaat ttttgaaga ggtgtagac ataatgcgt 
agtttagtt tatttgtaa atatgttat acataatta 
tgttattac tcaaataat aaactaata tttaattat 
atttttttt cgtttgctt ttccgggtt atcctttgt 
tgcgtgctt tcgagattt cctctctgc gtgcgctga 
aaatcatat cagaaacca acgttatga gtaaaaacc 
tacaactta aggaggaag ttataataa agcatttgt 
ggtagattg ttatttagt gaaattatc aggttgaaa 
ataggatat aaataatat acaagataa atacaaact 
atcagctgt attccaatg taattaagt gatttaaaa 
tcgtgcact aacactagc ttgtcctca atattataa 
tacctaatt gtgataaat tcttgtctt gtaaagatt 
gtgtacgtg cagtgatgt cttgtgaaa agttaatca 
tgtagatgg cgttgtttt actattttc aaactatgg 
gaaaatgtt ataaagaaa ataaagatg ataatcgta 
a

    If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
    Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.

    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY