General information | |||
TC014413 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007420.3: 10219527..10222336 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC014413 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_05628 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 100.0% (includes death as pupa, adult)
eclosion not fulfilled (died as pupa) - Number of animals showing the phenotype: 2 (3 dpi)eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)
adult lethality immediately after eclosion - Number of animals showing the phenotype: 1 (3 dpi)
adult lethality - Number of animals showing the phenotype: 3 (9 dpi)
adult lethality - Number of animals showing the phenotype: 2 (11 dpi)
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 100.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 100.0% (includes death as larva, prepupa, pupa, adult)
- >TC014413 RA
MADADDLLD YEDEENPEQ TVAETVGAG DQKKGIKGT YVSIHSSGF RDFLLKPEI LRAIVDCGF EHPSEVQHE CIPQAVLGM DILCQAKSG MGKTAVFVL ATLQQLEPT ENVVYVLVM CHTRELAFQ ISKEYERFS KYMPNIKVG VFFGGLSIQ KDEEVLKNN CPHIVVGTP GRILALVRS KKLNLKHLK HFILDECDK MLELLDMRR DVQEIYRNT PHGKQVMMF SATLSKEIR PVCKKFMQD PMEVYVDDE AKLTLHGLQ QHYVKLKEN EKNKKLFEL LDVLEFNQV VIFVKSVQR CIALAQLLT EQNFPAIGI HRGMNQEER LSRYQQFKD FQKRILVAT NLFGRGMDI ERVNIVFNY DMPEDSDTY LHRVARAGR FGTKGLAVT FVSEESDAK ILNEVQDRF DVNITELPD EIDLSTYIE GR
- >TC014413 RA
atggccgat gccgatgat cttttagac tacgaagac gaagaaaat ccggaacaa accgttgcc gagaccgtc ggggccggt gaccagaag aagggcatc aagggtact tacgtgtcc atccacagt tcaggcttc agggatttt ctcctgaaa ccggaaatt ttgcgcgcc attgttgac tgcggtttt gagcacccg tctgaagtg caacacgaa tgcatccca caggcagtt cttggtatg gacatcttg tgccaagcc aagtccggt atgggcaag actgcagtg ttcgtcctg gcgacgctt cagcagttg gagccaacc gaaaacgtg gtttacgtg cttgtaatg tgccacacg cgcgaattg gccttccaa atcagcaaa gagtacgag cggttcagt aaatacatg ccaaacatc aaagtcggt gtgtttttc ggcggcttg tctatacaa aaggacgag gaggtgttg aagaataat tgcccccat atcgtcgtt gggacaccg ggacgcatc ctcgccttg gtccggtcc aagaaactc aatctcaag catctcaaa catttcatt cttgacgag tgcgacaag atgctggag ttattagat atgaggagg gacgtgcaa gaaatttac cgtaacacg ccgcacggc aagcaagta atgatgttc agcgccacc ctaagtaaa gaaattcgc cccgtctgc aagaagttt atgcaagat ccgatggaa gtttatgtg gacgatgaa gcgaaatta actctgcac ggacttcag caacattac gttaaacta aaggaaaat gagaaaaac aaaaaattg tttgagctg cttgatgtt ttggaattt aaccaggtt gttattttc gtcaaatca gtccaacga tgtattgct ttggcgcaa ctattgacg gaacagaat ttccccgcc attggcatt cacagaggt atgaaccaa gaagaacgt ctttcacgt taccaacaa tttaaagac ttccaaaag agaattttg gtcgccacg aatttgttt ggcagaggc atggatatt gaacgagta aatatcgtt tttaactac gacatgcct gaggattca gatacttac ttacatcgt gtggcaaga gctggtcgt tttggtact aaaggtctt gctgttact tttgtatca gaagaaagc gatgcgaaa atcttaaat gaagtgcaa gacaggttt gatgttaac attacggaa ttaccggac gaaattgat ctcagcaca tatattgaa ggacgatga
- >TC014413 RA
tcgccatca ttcgtgttg gcgtcgttc acttcgcgt tgtcttgtt gtcgccaag aaacccctt aaaataaca gtcatcccg gttttttca agtcaaatt tttccagaa ttgcgttga aaacgcttt gaattcggt gtttttgtt gttattttc gtgttaaac ccggttttt aaaaagccg ctacaatgg ccgatgccg atgatcttt tagactacg aagacgaag aaaatccgg aacaaaccg ttgccgaga ccgtcgggg ccggtgacc agaagaagg gcatcaagg gtacttacg tgtccatcc acagttcag gcttcaggg attttctcc tgaaaccgg aaattttgc gcgccattg ttgactgcg gttttgagc acccgtctg aagtgcaac acgaatgca tcccacagg cagttcttg gtatggaca tcttgtgcc aagccaagt ccggtatgg gcaagactg cagtgttcg tcctggcga cgcttcagc agttggagc caaccgaaa acgtggttt acgtgcttg taatgtgcc acacgcgcg aattggcct tccaaatca gcaaagagt acgagcggt tcagtaaat acatgccaa acatcaaag tcggtgtgt ttttcggcg gcttgtcta tacaaaagg acgaggagg tgttgaaga ataattgcc cccatatcg tcgttggga caccgggac gcatcctcg ccttggtcc ggtccaaga aactcaatc tcaagcatc tcaaacatt tcattcttg acgagtgcg acaagatgc tggagttat tagatatga ggagggacg tgcaagaaa tttaccgta acacgccgc acggcaagc aagtaatga tgttcagcg ccaccctaa gtaaagaaa ttcgccccg tctgcaaga agtttatgc aagatccga tggaagttt atgtggacg atgaagcga aattaactc tgcacggac ttcagcaac attacgtta aactaaagg aaaatgaga aaaacaaaa aattgtttg agctgcttg atgttttgg aatttaacc aggttgtta ttttcgtca aatcagtcc aacgatgta ttgctttgg cgcaactat tgacggaac agaatttcc ccgccattg gcattcaca gaggtatga accaagaag aacgtcttt cacgttacc aacaattta aagacttcc aaaagagaa ttttggtcg ccacgaatt tgtttggca gaggcatgg atattgaac gagtaaata tcgttttta actacgaca tgcctgagg attcagata cttacttac atcgtgtgg caagagctg gtcgttttg gtactaaag gtcttgctg ttacttttg tatcagaag aaagcgatg cgaaaatct taaatgaag tgcaagaca ggtttgatg ttaacatta cggaattac cggacgaaa ttgatctca gcacatata ttgaaggac gatgattgc acagtcgtg gtgtaaggt gtatttact tgtgttttt cattaattt gagtgttgg gtaattttt tgttaccca cttagaata tttaagttt caatattcg acaagttcc attttttta tgtgaatgt attctaata aatgtcaca attataa
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
