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Gene information
General information
TC014184 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007416.3: 2864066..2867024
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
      TC014184
      iBeetle screen iB_05581

      Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

      iB sequence
      Phenotype after pupal injection
      Usually 10 injected animals

      Pupal injection procedure

      Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

      3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

      9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

      11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

      Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

      13 dpi: Egg productivity and Ovary analysis
      The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

      14 dpi: Analysis of embryonic musculature and early embryonic development
      Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

      15 dpi: Analysis of larval instar 1 cuticle
      Offspring of injected females were analysed and cuticle phenotypes were annotated.

      22 dpi: Stink gland analysis
      Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

      Terms used in the pupal injection procedure

      larval pantagmatic defects
      At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
      empty eggs
      Just empty shells are visible, no cuticle has been developed.
      strong defects
      L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
      strongly fragmented (cuticle crumbs)
      No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
      cuticle remnants (with unidentifiable segments)
      Segments or parts of appendages are recognizable, but identity is not clear.
      cuticle remnants (with some identifiable segments)
      At least one segment or appendage is clearly regonizable.
      number of eggs on slide
      affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
      For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
      total number of affected eggs/embryos/larvae
      Summary of all different phenotypes/ phenotypic series which were annotated.
      inside-out
      The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
      starved
      Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
      eclosion not fulfilled
      The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
      Please see the help page for more information
      Metamorphosis and survival

      Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)

      eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 1 (3 dpi)
      Days post injection


      Analysis of larval stage 1 cuticle
      number of eggs/embryos/larvae on slide: < 50
      Phenotype after larval injection
      Usually 10 injected animals

      Larval injection procedure

      Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

      11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

      16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

      19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

      22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

      41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

      Terms used in the larval injection procedure

      pupal/ adult pantagmatic defects
      At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
      pupal molt not fulfilled
      The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
      eclosion not fulfilled
      The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
      starved
      Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
      Metamorphosis and survival

      Lethalities 11 days after larval injection: -1.0% (includes death as larva, prepupa, pupa)
      Lethalities 22 days after larval injection: -1.0% (includes death as larva, prepupa, pupa, adult)

      RNAi sequence
      Primers
      Left: Right:
      Protein sequence
      • >TC014184 RA
        MGYVSGLSA VLIFFISLS TGQRITTIQ LDGVQYFVS 
        RMNPYSPEL NYYLAYQYC RSLGLQLVS FETKEKADS 
        ITQYLKNAG YDKFDFWTS GNRLGTHMF LWMSTGLPF 
        NATFNYMRK ADGEDENGA TISDIVSGS TSPQRTARE 
        SSDSGSANG CVVLKAPNF EWDTDDCVS IKDFICEQT 
        RCYYYNYGS IPVSTAQGK PKPTVTTTQ STPTTESIK 
        NNFIHISNI INKLRSTQT AKKSDKLDD SAILTDKEN 
        LEQATNGPY DNFNSHDEL QDDPAAIAD QASDYVSTI 
        QPEKLITTI DPSNPSMN
      CDS sequence
      • >TC014184 RA
        atgggttac gttagtggt ttatctgct gttttaata 
        ttttttatt agtttgtcc accgggcaa agaataacc 
        accatccag ctcgatggc gtccagtac ttcgtcagc 
        aggatgaac ccttactcg cccgaattg aactactac 
        ctggcttac cagtactgc aggtcttta gggctccaa 
        ttagtctcg tttgaaact aaagaaaaa gcagactcg 
        atcacccaa tacctcaaa aacgccggc tacgacaaa 
        ttcgatttc tggacttcg gggaatcgg ctcgggact 
        cacatgttc ctctggatg agcaccgga ctccccttt 
        aacgccact ttcaactac atgagaaaa gcggacggc 
        gaggacgag aacggggcc actatttcc gacatcgtc 
        agcggcagc actagccct cagagaacc gcaagggag 
        agtagcgat agcgggtcg gccaacggg tgcgtggtc 
        ctgaaggcc ccgaacttc gagtgggat actgacgat 
        tgcgtgtca attaaagat ttcatttgc gagcaaacc 
        cgttgctat tattacaat tatggttct attcctgtg 
        tccactgcg caggggaaa ccaaaaccc acagttacg 
        accactcag tcgactccg acgaccgaa agtatcaaa 
        aataacttt attcatatt agtaatatt ataaataag 
        cttcgctca actcaaaca gctaaaaaa tcggacaaa 
        ctggatgat tctgcaatt ctgactgac aaggagaat 
        ttggagcag gccacaaat ggtccgtac gacaatttt 
        aactcgcac gatgaattg caagatgat ccggcagct 
        atcgctgat caggcttct gattacgtc tccactatt 
        cagcctgag aagctcatc accaccatc gatccttcc 
        aatccgtcc atgaattag
      mRNA sequence
      • >TC014184 RA
        ccacaaaaa caacaagcg attgtaaag cttctcagt 
        cggcgagtt cgcttttga taaagaaac atcatgggt 
        tacgttagt ggtttatct gctgtttta atatttttt 
        attagtttg tccaccggg caaagaata accaccatc 
        cagctcgat ggcgtccag tacttcgtc agcaggatg 
        aacccttac tcgcccgaa ttgaactac tacctggct 
        taccagtac tgcaggtct ttagggctc caattagtc 
        tcgtttgaa actaaagaa aaagcagac tcgatcacc 
        caatacctc aaaaacgcc ggctacgac aaattcgat 
        ttctggact tcggggaat cggctcggg actcacatg 
        ttcctctgg atgagcacc ggactcccc tttaacgcc 
        actttcaac tacatgaga aaagcggac ggcgaggac 
        gagaacggg gccactatt tccgacatc gtcagcggc 
        agcactagc cctcagaga accgcaagg gagagtagc 
        gatagcggg tcggccaac gggtgcgtg gtcctgaag 
        gccccgaac ttcgagtgg gatactgac gattgcgtg 
        tcaattaaa gatttcatt tgcgagcaa acccgttgc 
        tattattac aattatggt tctattcct gtgtccact 
        gcgcagggg aaaccaaaa cccacagtt acgaccact 
        cagtcgact ccgacgacc gaaagtatc aaaaataac 
        tttattcat attagtaat attataaat aagcttcgc 
        tcaactcaa acagctaaa aaatcggac aaactggat 
        gattctgca attctgact gacaaggag aatttggag 
        caggccaca aatggtccg tacgacaat tttaactcg 
        cacgatgaa ttgcaagat gatccggca gctatcgct 
        gatcaggct tctgattac gtctccact attcagcct 
        gagaagctc atcaccacc atcgatcct tccaatccg 
        tccatgaat tagtattta ttgtatgtg atgtcatgt 
        attacattc tctgtattt ttatagcag tttaatgta 
        gcagtaaac agtaataaa gacattctt tttta
      The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY