Status
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Gene information
General information
TC033171
Former TC numbers

If one gene is splitted or genes are merged, the original TC numbers are listed. One listed former TC number indicates the previous gene has be splitted, serveral former TC number represents a merged gene.

TC013332,TC013331,TC013329
Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007420.3: 11003136..11057818
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC033171
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes


    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
    {{ goGene }}
    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
    You may enter your name. The contact information can help us to clarify any questions. If you agree, we may show your name on this page to honor your contribution.
    Email
    We will use your email address only for possible questions regarding this annotation. We will never show your address or give it away.
    Publish name
    If you have entered your name and agree by marking the checkbox. we might show your name on this page to honor your contribution.
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_05419

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 60.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 3 (3 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 3 (9 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 50
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC033171 RA
      MDSECVEMD LSTRQRDPQ DNAKMRVAK SVFSIRSLV 
      DLGDAADAP DDDAPKEPV ASDRNPEVM GVSEEVTPN 
      AGVEPRPPG PDNSDGSDP EPDEFAPKR KQRRYRTTF 
      TSYQLEELE KAFSRTHYP DVFTREELA MKIGLTEAR 
      IQVWFQNRR AKWRKQEKV GPQGHPYNP YLSPGGGGP 
      APSVVAPSL PNPFNLPFG LRKPFDSLS FRYPPHVLP 
      SYLPSPPGY HRGGPALLP PSVSLYPSA SSFQTLLAN 
      ISAAQRPKL PAQEFTTSP PLSPGGSAV TPPDVDRRS 
      SSIASLRLK AREHELRLE MLRQNGDLI S
    CDS sequence
    • >TC033171 RA
      atggatagt gagtgtgtc gaaatggac ctaagcacg 
      aggcagaga gacccccag gataacgcc aagatgagg 
      gtcgccaag tcggtcttc tccatcagg agtctagtt 
      gacctcggc gacgctgcc gacgccccc gacgacgac 
      gccccaaaa gaacctgtc gcgtccgat aggaacccc 
      gaagtgatg ggagtctct gaagaggtc acgccgaac 
      gccggagtc gagccgcgg cctccgggc ccggacaac 
      agcgacggc agcgacccg gagcccgac gagttcgcc 
      cccaagagg aagcagcgc cgctacagg accaccttc 
      accagctac cagctggag gagctggaa aaagccttc 
      tcaaggacg cactacccg gacgtgttc accagagag 
      gaacttgct atgaagata gggctaaca gaagcaaga 
      atacaggtc tggttccag aaccgacgg gccaaatgg 
      cgcaagcag gagaaagtg ggccctcag ggccacccc 
      tacaacccc tacttatcc cctggcggc gggggccct 
      gccccctcg gtggtcgcc ccctccctg cccaacccc 
      ttcaacctg ccctttggg ctccggaag cccttcgac 
      tcgctcagc ttccggtac cccccacac gtgctccct 
      agctatctt ccgtcgccc cccggctac caccgcggg 
      gggcccgcc ctgctgccc ccctcggtg agtctctac 
      ccctctgcc agctccttc caaaccctt ctggcgaac 
      atttcggcg gcgcagagg cccaaactg ccggcgcag 
      gagttcacc acttcgccc cccttgtct ccggggggc 
      tcggcagtg actccccct gatgtggac cgccggagc 
      tccagcatc gcctccttg aggctcaaa gctcgcgag 
      cacgagttg agactggaa atgttgagg caaaacggc 
      gatttgata agttga
    mRNA sequence
    • >TC033171 RA
      caaggccgc gctccgcct atgggttgt cccatatgg 
      ataccgtcc catctcgta cctcgcaac acccgacca 
      cagtaactt ccccgcttt attgactga cggtgtagc 
      tcggtggag ctgcacgtt tcgacacct gctactcta 
      atacataaa ctaaagtga taattacac acgacgaga 
      cggacaaat tatacgctg tgttccgaa aataaacgg 
      cacgcgtgt gtgcgccgc agtgatgat aaatgcacg 
      ggtgatgtg aaagtggac catgggagg acgcttccc 
      accgccgga cgcatgggg ctgtaacta ataaatgca 
      ccgagacct cttatcaaa ggaagccat ttcgactgc 
      actcgtatt ttttatcta gtgactcat ggatagtga 
      gtgtgtcga aatggacct aagcacgag gcagagaga 
      cccccagga taacgccaa gatgagggt cgccaagtc 
      ggtcttctc catcaggag tctagttga cctcggcga 
      cgctgccga cgcccccga cgacgacgc cccaaaaga 
      acctgtcgc gtccgatag gaaccccga agtgatggg 
      agtctctga agaggtcac gccgaacgc cggagtcga 
      gccgcggcc tccgggccc ggacaacag cgacggcag 
      cgacccgga gcccgacga gttcgcccc caagaggaa 
      gcagcgccg ctacaggac caccttcac cagctacca 
      gctggagga gctggaaaa agccttctc aaggacgca 
      ctacccgga cgtgttcac cagagagga acttgctat 
      gaagatagg gctaacaga agcaagaat acaggtctg 
      gttccagaa ccgacgggc caaatggcg caagcagga 
      gaaagtggg ccctcaggg ccaccccta caaccccta 
      cttatcccc tggcggcgg gggccctgc cccctcggt 
      ggtcgcccc ctccctgcc caacccctt caacctgcc 
      ctttgggct ccggaagcc cttcgactc gctcagctt 
      ccggtaccc cccacacgt gctccctag ctatcttcc 
      gtcgccccc cggctacca ccgcggggg gcccgccct 
      gctgccccc ctcggtgag tctctaccc ctctgccag 
      ctccttcca aacccttct ggcgaacat ttcggcggc 
      gcagaggcc caaactgcc ggcgcagga gttcaccac 
      ttcgccccc cttgtctcc ggggggctc ggcagtgac 
      tccccctga tgtggaccg ccggagctc cagcatcgc 
      ctccttgag gctcaaagc tcgcgagca cgagttgag 
      actggaaat gttgaggca aaacggcga tttgataag 
      ttgagaggg tgcaatagt gatacacga agccatttt 
      gttgttttg agtattaga aaagccggc ctacttgat 
      acgtacttt tgtaaataa attatcatt ttgttgcag 
      attgtaata atcgtagtg taagttttt ttctatttt 
      taagtagat agtatttat tgaaattta attgtgaga 
      tgacgtaac gaatccgtc ctaatgtat catgtacgt 
      acttaaaaa aatcaataa aaatgtttt ataaga
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY