Status
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Gene information
General information
TC012997 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007420.3: 15409820..15418646
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC012997
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes


    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
    {{ goGene }}
    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
    {{ blurReferenceResult }}
    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
    You may enter your name. The contact information can help us to clarify any questions. If you agree, we may show your name on this page to honor your contribution.
    Email
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    Publish name
    If you have entered your name and agree by marking the checkbox. we might show your name on this page to honor your contribution.
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_05368

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 0.0% (includes death as pupa, adult)

    beetle stock: bad (increased lethality),
    Pupal morphology
    beetle stock: bad (increased lethality),
    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 50
    about 25

    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 30.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 40.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality early (L5/6) - Number of animals showing the phenotype: 3 (11 dpi)
    Days post injection


    pupal molt delayed (still larva) - Number of animals showing the phenotype: 2 (11 dpi)
    Days post injection


    eclosion delayed (still pupa) - Number of animals showing the phenotype: 2 (16 dpi)
    Days post injection


    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC012997 RA
      MESESGTTN TKISDSGYS NSCSNSNSQ RSASSKSRH 
      SGSNSSRSS GYCGTTNPD ESGEIGFQP PKRNKEHKK 
      KKLKSANST NGGNVSSVA ATAPSDNRN ICVILKEDS 
      AEATMGVEV LPVPVVETA VPSTDLVET NEPDPISPS 
      VPVTAETPP PDKEMSWTD QQSQHTEKE TLNAASVPM 
      ETSVEKTKV TEDGFCCVI SMYDGVVLY TTPSLTAVL 
      GFPKDMWLG RSFIDFVHP KDRETFSSQ VTTGIALPL 
      VDSQGKFKD IKNSLYVCL RKYRGLKSS GFGVVEKAV 
      SYQAFQLTV TFRHLNDTP DSKKLLDTN GGMFLVVVA 
      NPVYSSYKV PEERVKFAK FGMRHTAAC TFSHVDPDV 
      VTNFGFLPQ DMLGKSIFD FYHPEDMSF LKEVYESVM 
      TMCQIAGSV FRSKPYRFA VQNGGFVMI ETEWSSFVN 
      PWSRRLEFV IGLHRVLQG PKNPDIFDQ NKEDEKKYI 
      PEEVLKESK VIQGEILLL LNKELSRPS EAAKHEVSK 
      RCKDLANFM EYLMDEVNK SNLQLDLPQ DTDPTISER 
      DSVMLGEIS PHHDYYDSK SSSETPPSY NQLNYNENI 
      QRFFQSKPK TTISDESSE RPSASNDTD PEGKILPSV 
      QHCANNQKC LSPVGNSGA SGSGSAGNL SSVSNPNME 
      SATTSATNT SNDSYKPLL LTEAILYKH NEDMEKIMI 
      KRHREQRSV TRESKKSHH KHEKANAGD KTVEKNDYS 
      QGHGVKRSV SHSWEGESH KITKHKHLT GRNNNQNQD 
      QTRMKPPQV PTNNDSKNE NVYQQGMND VNLWPPFSV 
      TVTPMSNTQ NLNVTSNAN PLGGLATRM FPLYYIPTQ 
      QRGFEGSVN DPRYQVQYM PGMIYNYNP IFPAPPILC 
      SPLPVLPIP VPPSVSSVN PEMCHPPNE ASAEYKSKV 
      PQFQRPASQ ATSVKAEPG SALGSIASA SVANKMNNL 
      NDRAALFRD NNIIDDESC FSSSYSSFL KTDYGSGSN 
      DDANVSQPE GGPKHRKNV PIRKRDPPW LEAVTITPE 
      IIYKYQMTV KSLDDILEA DLHTLKKID QPMLVNDQL 
      NQLYIEMEL EGLSTKLTL EEGITSSSS GDEISTNSS 
      KQKKKRRSQ SAVMMMFYE ENAPLPSPN KS
    CDS sequence
    • >TC012997 RA
      atggaatct gaatccgga acgacaaac acaaaaatc 
      tccgattca ggatattca aacagctgt agtaacagc 
      aattcgcaa agaagtgca agctctaag tcccgccac 
      agtgggagt aactcgagt agaagtagt ggctattgt 
      gggactact aatccggac gaaagcggc gagattgga 
      ttccaacca cctaaacgt aacaaagaa cacaaaaag 
      aaaaaactc aagtcggcg aattcaaca aatggtggc 
      aacgtttcg tcagttgca gcaaccgcg ccttcagac 
      aatagaaac atttgtgtt attttaaag gaagacagt 
      gctgaagca accatgggt gttgaagtt cttccggtt 
      cctgttgtt gaaacagcg gttccttca accgattta 
      gttgaaacg aacgaaccc gaccccatc tccccctca 
      gtgccagtc acagcggag acaccacct ccagataaa 
      gaaatgtcc tggaccgac caacaaagc caacacacc 
      gaaaaagag acattgaat gctgcgagc gttccaatg 
      gaaacctcc gttgagaaa accaaagtc acggaggat 
      ggtttctgc tgcgtcatt tccatgtat gatggagtt 
      gttttgtac acaacccca agtctgact gcagttttg 
      ggttttccg aaagacatg tggttaggg agatcgttc 
      attgatttt gtgcatccc aaggatcgg gaaactttt 
      tctagtcaa gtcactact ggcattgct ttgcctttg 
      gtcgactct caagggaaa ttcaaagat attaaaaat 
      tcgctttat gtctgcctc cgtaaatat agagggctc 
      aaatcgtcc ggctttggt gttgttgag aaggcagtg 
      tcgtaccaa gcgtttcag ttgactgtt accttcaga 
      cacttgaat gacacgcca gactcgaaa aaactgcta 
      gacaccaat gggggaatg tttctcgta gtcgtagca 
      aatcctgta tattcctcg tacaaagtt cctgaagag 
      cgagtaaag tttgccaaa tttggcatg agacacacc 
      gctgcgtgc actttcagt catgtggac ccggacgtg 
      gtcacaaat ttcggtttt ttgccacag gacatgtta 
      ggaaaatca atttttgat ttctatcat cctgaagac 
      atgtcgttc ctcaaggaa gtctacgaa tctgttatg 
      accatgtgc caaatagct ggatcggtg tttcgcagc 
      aaaccgtac agatttgct gtgcaaaac ggcggtttt 
      gttatgatt gaaacagag tggtccagc tttgtcaat 
      ccgtggtca aggcgtctc gaatttgta ataggcctc 
      catcgggtt ttacaagga ccgaaaaac ccggatatt 
      tttgaccaa aacaaggaa gatgagaaa aaatatatc 
      cctgaagaa gtactcaaa gagagtaag gtgattcaa 
      ggtgaaatt ttattgtta ctaaacaag gaattgtca 
      aggccgtcc gaagcggca aaacatgag gtttcaaag 
      agatgcaaa gatcttgca aattttatg gaatatctt 
      atggatgaa gtaaataaa agtaattta caactagac 
      ttacctcaa gataccgat cccaccatt tcggaacgt 
      gattctgtg atgttgggc gaaatatcc ccacaccat 
      gactactac gacagtaaa tcgtcgtca gagacaccc 
      cctagctat aaccaactg aattataac gaaaacatc 
      cagagattt tttcaaagc aaacctaag accacaatt 
      tcggacgaa agcagcgaa cgtccgagc gcctcaaac 
      gatacagat cctgaaggc aaaatttta ccttcagtt 
      caacattgt gccaacaat caaaagtgt ctttccccc 
      gttggaaac agcggagct tccggaagc ggaagcgcc 
      ggaaacctg agttcagtc agtaacccc aacatggaa 
      agcgctaca acaagtgcc accaacacc tccaacgac 
      tcctacaaa cccctcctc ctaacagaa gcgattttg 
      tacaaacat aacgaagac atggaaaaa atcatgatc 
      aagcgacac cgggaacaa agatccgtc actcgagag 
      agtaaaaaa tcgcaccac aaacacgaa aaggcaaat 
      gctggtgat aaaacggtg gagaaaaat gattacagt 
      caaggtcat ggggtgaaa cgaagcgtt tcgcattcg 
      tgggaaggc gaaagtcac aaaattacc aaacacaaa 
      catctcaca gggaggaat aataaccaa aaccaggac 
      cagacacga atgaagccg ccacaagta ccaactaac 
      aatgacagt aaaaacgaa aatgtgtac cagcaaggg 
      atgaatgat gtgaatttg tggccccca ttttcggtc 
      accgttacc ccaatgagt aacacccaa aatttgaac 
      gttacctca aacgccaat cctctggga ggtcttgcc 
      acaagaatg ttccccctt tattacata ccaacacag 
      cagaggggc ttcgaaggc agtgttaac gatcccaga 
      tatcaagtt caatacatg ccagggatg atctacaat 
      tacaacccc atattcccg gcccctccc atcctatgt 
      tcccccctt ccagtgttg ccaatccca gttcctccc 
      tcggtgtca tcagtgaat ccagaaatg tgccatcct 
      ccaaatgag gcttcagct gaatacaag agcaaagtc 
      ccccaattc cagagacct gcctcccaa gccacttcg 
      gtcaaagct gagcctggg agtgcctta gggtccata 
      gcatcggcc agtgtggcc aataagatg aataatcta 
      aacgatcga gctgctctt tttcgcgat aataacatt 
      attgacgat gagagctgt ttttcctcg tcttattcc 
      tcgtttttg aaaaccgat tacggctct gggtccaat 
      gacgatgct aatgtttcg caacctgaa ggcggccca 
      aaacaccgc aaaaatgtg ccaataagg aaacgagac 
      ccgccgtgg ctcgaagca gtgacaata acccccgaa 
      ataatctac aaatatcaa atgacggtg aaaagtttg 
      gacgatatc cttgaggca gacctccac actttgaaa 
      aaaatcgat cagccaatg ctcgtaaac gaccaatta 
      aaccagctt tatatcgaa atggaatta gagggatta 
      tcgacgaaa ttaacgctg gaggaagga attacgtct 
      agcagcagc ggggatgaa attagtacc aactcatca 
      aaacagaag aaaaaaagg cggtcgcaa agtgcagtc 
      atgatgatg ttctacgaa gaaaacgcc cctctaccc 
      tcaccaaac aagtcataa
    mRNA sequence
    • >TC012997 RA
      ccaaaggaa aatgttgcg ccagtaaag tttcaacca 
      ggcttgcag taatatgaa attattttg ttgcgctta 
      attattgcg ttttttcgt gattgctac cagtgcttc 
      gatcttttg aaaaatatt tactgaaaa tgtaacaac 
      gttttatat agcaattta aattcgtta tggaatctg 
      aatccggaa cgacaaaca caaaaatct ccgattcag 
      gatattcaa acagctgta gtaacagca attcgcaaa 
      gaagtgcaa gctctaagt cccgccaca gtgggagta 
      actcgagta gaagtagtg gctattgtg ggactacta 
      atccggacg aaagcggcg agattggat tccaaccac 
      ctaaacgta acaaagaac acaaaaaga aaaaactca 
      agtcggcga attcaacaa atggtggca acgtttcgt 
      cagttgcag caaccgcgc cttcagaca atagaaaca 
      tttgtgtta ttttaaagg aagacagtg ctgaagcaa 
      ccatgggtg ttgaagttc ttccggttc ctgttgttg 
      aaacagcgg ttccttcaa ccgatttag ttgaaacga 
      acgaacccg accccatct ccccctcag tgccagtca 
      cagcggaga caccacctc cagataaag aaatgtcct 
      ggaccgacc aacaaagcc aacacaccg aaaaagaga 
      cattgaatg ctgcgagcg ttccaatgg aaacctccg 
      ttgagaaaa ccaaagtca cggaggatg gtttctgct 
      gcgtcattt ccatgtatg atggagttg ttttgtaca 
      caaccccaa gtctgactg cagttttgg gttttccga 
      aagacatgt ggttaggga gatcgttca ttgattttg 
      tgcatccca aggatcggg aaacttttt ctagtcaag 
      tcactactg gcattgctt tgcctttgg tcgactctc 
      aagggaaat tcaaagata ttaaaaatt cgctttatg 
      tctgcctcc gtaaatata gagggctca aatcgtccg 
      gctttggtg ttgttgaga aggcagtgt cgtaccaag 
      cgtttcagt tgactgtta ccttcagac acttgaatg 
      acacgccag actcgaaaa aactgctag acaccaatg 
      ggggaatgt ttctcgtag tcgtagcaa atcctgtat 
      attcctcgt acaaagttc ctgaagagc gagtaaagt 
      ttgccaaat ttggcatga gacacaccg ctgcgtgca 
      ctttcagtc atgtggacc cggacgtgg tcacaaatt 
      tcggttttt tgccacagg acatgttag gaaaatcaa 
      tttttgatt tctatcatc ctgaagaca tgtcgttcc 
      tcaaggaag tctacgaat ctgttatga ccatgtgcc 
      aaatagctg gatcggtgt ttcgcagca aaccgtaca 
      gatttgctg tgcaaaacg gcggttttg ttatgattg 
      aaacagagt ggtccagct ttgtcaatc cgtggtcaa 
      ggcgtctcg aatttgtaa taggcctcc atcgggttt 
      tacaaggac cgaaaaacc cggatattt ttgaccaaa 
      acaaggaag atgagaaaa aatatatcc ctgaagaag 
      tactcaaag agagtaagg tgattcaag gtgaaattt 
      tattgttac taaacaagg aattgtcaa ggccgtccg 
      aagcggcaa aacatgagg tttcaaaga gatgcaaag 
      atcttgcaa attttatgg aatatctta tggatgaag 
      taaataaaa gtaatttac aactagact tacctcaag 
      ataccgatc ccaccattt cggaacgtg attctgtga 
      tgttgggcg aaatatccc cacaccatg actactacg 
      acagtaaat cgtcgtcag agacacccc ctagctata 
      accaactga attataacg aaaacatcc agagatttt 
      ttcaaagca aacctaaga ccacaattt cggacgaaa 
      gcagcgaac gtccgagcg cctcaaacg atacagatc 
      ctgaaggca aaattttac cttcagttc aacattgtg 
      ccaacaatc aaaagtgtc tttcccccg ttggaaaca 
      gcggagctt ccggaagcg gaagcgccg gaaacctga 
      gttcagtca gtaacccca acatggaaa gcgctacaa 
      caagtgcca ccaacacct ccaacgact cctacaaac 
      ccctcctcc taacagaag cgattttgt acaaacata 
      acgaagaca tggaaaaaa tcatgatca agcgacacc 
      gggaacaaa gatccgtca ctcgagaga gtaaaaaat 
      cgcaccaca aacacgaaa aggcaaatg ctggtgata 
      aaacggtgg agaaaaatg attacagtc aaggtcatg 
      gggtgaaac gaagcgttt cgcattcgt gggaaggcg 
      aaagtcaca aaattacca aacacaaac atctcacag 
      ggaggaata ataaccaaa accaggacc agacacgaa 
      tgaagccgc cacaagtac caactaaca atgacagta 
      aaaacgaaa atgtgtacc agcaaggga tgaatgatg 
      tgaatttgt ggcccccat tttcggtca ccgttaccc 
      caatgagta acacccaaa atttgaacg ttacctcaa 
      acgccaatc ctctgggag gtcttgcca caagaatgt 
      tcccccttt attacatac caacacagc agaggggct 
      tcgaaggca gtgttaacg atcccagat atcaagttc 
      aatacatgc cagggatga tctacaatt acaacccca 
      tattcccgg cccctccca tcctatgtt ccccccttc 
      cagtgttgc caatcccag ttcctccct cggtgtcat 
      cagtgaatc cagaaatgt gccatcctc caaatgagg 
      cttcagctg aatacaaga gcaaagtcc cccaattcc 
      agagacctg cctcccaag ccacttcgg tcaaagctg 
      agcctggga gtgccttag ggtccatag catcggcca 
      gtgtggcca ataagatga ataatctaa acgatcgag 
      ctgctcttt ttcgcgata ataacatta ttgacgatg 
      agagctgtt tttcctcgt cttattcct cgtttttga 
      aaaccgatt acggctctg ggtccaatg acgatgcta 
      atgtttcgc aacctgaag gcggcccaa aacaccgca 
      aaaatgtgc caataagga aacgagacc cgccgtggc 
      tcgaagcag tgacaataa cccccgaaa taatctaca 
      aatatcaaa tgacggtga aaagtttgg acgatatcc 
      ttgaggcag acctccaca ctttgaaaa aaatcgatc 
      agccaatgc tcgtaaacg accaattaa accagcttt 
      atatcgaaa tggaattag agggattat cgacgaaat 
      taacgctgg aggaaggaa ttacgtcta gcagcagcg 
      gggatgaaa ttagtacca actcatcaa aacagaaga 
      aaaaaaggc ggtcgcaaa gtgcagtca tgatgatgt 
      tctacgaag aaaacgccc ctctaccct caccaaaca 
      agtcataaa actccaatt caccagagt gttactatt 
      tttataaaa tttgcactg gttttgttt ttttattgc 
      tacttctgg cgcaatttt tgatgttgt agagtaaag 
      aacttttta cactattct tctatttag ataattctt 
      gtatttaaa tcccacgtt gtataactt gaataaaaa 
      tttgaaaaa aat
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY