Status
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Gene information
General information
TC011550 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007418.3: 3797200..3799515
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    		TC011550
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes

    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
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    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
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    Name
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    Email
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_05054

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 1 (3 dpi)
    Days post injection

    Fertility
    mature egg deposition blocked number 1st lateral oviduct: 2 number 2nd lateral oviduct: 3 - Number of animals showing the phenotype: 4
    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 10.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 100.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection

    adult lethality immediately after eclosion - Number of animals showing the phenotype: 1 (16 dpi)
    Days post injection

    eclosion not fulfilled (died as pupa) - Number of animals showing the phenotype: 4 (16 dpi)
    Days post injection

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 4 (16 dpi)
    Days post injection


    Pupal morphology
    pronotum bristle size shortened - Number of animals showing the phenotype: 9

    abdomen gin-trap setae size shortened - Number of animals showing the phenotype: 9

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC011550 RA
      MPSKKKKYN ARFPAGRIK KIMQTDEEV GKVAQAVPV 
IISRTLELF VESLLTKSM QITQSRNAK TLTPSHMKQ 
CILSESRFD FLKDLVKNI PDASAQEDN KNNLMFEAQ 
QLQEAESKQ EPAAAVEAS KPEVTANFY TEQSTSTAR 
TPVIQYGPK VAQVETKKF NFSVNNLIE PAKEGPKVR 
ISVAEPVPV PPLVPTRGP ANSVQENTP PVNCDNIPP 
LIPISHHYY NQNTEDTLC IDEDYDN
    CDS sequence
    • >TC011550 RA
      atgccttca aaaaagaaa aaatacaat gccagattt 
ccagcaggc cgtattaaa aaaataatg cagactgat 
gaagaggtt ggaaaagtg gcacaagct gtaccagtt 
ataatctcc cgaacgctg gagttgttt gtggagtcg 
ctgctgacg aagtcaatg caaataacg cagtcccgc 
aacgccaag actttaact ccgtcccac atgaagcaa 
tgtatatta tccgagagt cgtttcgac tttttaaaa 
gacttagtg aaaaatatc cctgatgca agtgcacaa 
gaagataac aaaaacaac ctgatgttc gaagcgcaa 
cagctgcag gaggccgag tcaaaacag gagcctgcg 
gcagcagtg gaggcttcg aagccggaa gtaacggcg 
aatttttac acagagcag agtacgtcc acggctaga 
acaccagtt atccagtat ggacctaaa gtagcgcaa 
gtagagacg aaaaagttc aatttctca gttaataat 
ttgatcgag ccggcgaag gaaggaccc aaagtgcgc 
atttcggtg gcggaaccc gtacctgtg cccccttta 
gtaccaaca agggggccc gctaatagt gtccaagaa 
aatacgccg ccagtcaac tgcgacaat atcccgcct 
cttatacct atttcacac cattattac aatcagaac 
actgaagac actctgtgt attgatgaa gattatgat 
aattag
    mRNA sequence
    • >TC011550 RA
      gtgattgtt gacaaattg aaacgaaat caaagattt 
ttagatatg ccttcaaaa aagaaaaaa tacaatgcc 
agatttcca gcaggccgt attaaaaaa ataatgcag 
actgatgaa gaggttgga aaagtggca caagctgta 
ccagttata atctcccga acgctggag ttgtttgtg 
gagtcgctg ctgacgaag tcaatgcaa ataacgcag 
tcccgcaac gccaagact ttaactccg tcccacatg 
aagcaatgt atattatcc gagagtcgt ttcgacttt 
ttaaaagac ttagtgaaa aatatccct gatgcaagt 
gcacaagaa gataacaaa aacaacctg atgttcgaa 
gcgcaacag ctgcaggag gccgagtca aaacaggag 
cctgcggca gcagtggag gcttcgaag ccggaagta 
acggcgaat ttttacaca gagcagagt acgtccacg 
gctagaaca ccagttatc cagtatgga cctaaagta 
gcgcaagta gagacgaaa aagttcaat ttctcagtt 
aataatttg atcgagccg gcgaaggaa ggacccaaa 
gtgcgcatt tcggtggcg gaacccgta cctgtgccc 
cctttagta ccaacaagg gggcccgct aatagtgtc 
caagaaaat acgccgcca gtcaactgc gacaatatc 
ccgcctctt atacctatt tcacaccat tattacaat 
cagaacact gaagacact ctgtgtatt gatgaagat 
tatgataat tagattgtt ctatattta tcaccgatt 
tatcagttc atttgtatc aagtaaacg taactacct 
acctgacga cttttccga tgacctaac agtgaaata 
tacagttgt tattaaaac gttttgtat tgggtaaaa 
aaatacatt agtacatta tgtacaatt ttaaaaata 
ttaaagtat tataatcaa taccttata tacatacaa 
ctacttttt taactcctc tgaaggacc tcatgagcc 
tgccaatcg ttactttta tttatataa gttagaaat 
taaataata aagtcatta aattattac atcttgttt 
tttacatta ttatgggca caagttctc atcacggcg 
catataatt tgaactatg gaaaataat acaaggcga 
cttactctt aatattgca aattgtaag tgggcgatt 
agttacact gttaaaact taaataagg taactacaa 
tttacattt gttacataa acctattcg aaagaataa 
ataaaggaa ataagttaa ttacagact tttcaattc 
tattttaac aagtgttag ataatacaa acgcactct 
tagactatg aacgactta tcagtctgg gaaaaccga 
accgaagtt gaatttttt aatttgtgt tttttttta 
cttccatcg ttcgacatg tccagtgta gacgtattt 
tgtccgata tattgacac tcgggggaa gaaaattaa 
attccacaa cttgtccaa agggtcatt gaattttta 
atgctgata aacattgat ttattaaca tatgcccta 
acaaaaata aggttttat catccaaaa caaataatt 
catgggtgc aaaataaga aatgcaaat atgtaacgt 
tgagtgttt gttcaagat aacgtttca ggaatttcc 
tagtgattc atacttttt tcctaaata tgtacataa 
aaacaaacg agttttttg ctcaataaa tgcaaatgg 
aaaatttgg aaatacaat atgtcgctg gtaaaacta 
cggatatat ctcgggact ttttcaatt gacactctg 
gcaacatgg caatttcgt acacaaata cctaatttt 
ggtctaaaa gatgaattt gcgttattt tgtaaatcg 
tctttccaa gaaaacaaa caaaactag atttttttt 
taaattaat tttattgta ttagcagct gtaaactga 
ataaaagtg aagcaataa attggaatt atttaatac 
tctcttgtc tattcgact aaaattttt ggccgaat

    If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
    Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.

    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY