Status
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Gene information
General information
TC010578 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007422.5: 5137198..5142735
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    		TC010578
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes

    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
    {{ goGene }}
    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
    You may enter your name. The contact information can help us to clarify any questions. If you agree, we may show your name on this page to honor your contribution.
    Email
    We will use your email address only for possible questions regarding this annotation. We will never show your address or give it away.
    Publish name
    If you have entered your name and agree by marking the checkbox. we might show your name on this page to honor your contribution.
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_04874

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 1 (3 dpi)
    Days post injection

    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 10.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 10.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC010578 RA
      MLEARAMKS QIAEFFANQ TVFLTGGGG FLGKVLIEK 
LLRECSDVS KIYMLMRQK KGKTPQQRV SEVFDFPCF 
DYIKANNAA IIKKVHVIH GDCQKPDLG LDPEDVRVL 
KAETTCVIH AAASVRFDQ SLKEASYNV RATRDILEL 
AKQMANLKC FIFVSTAYS NPLNAHVKE DFYEPPIEA 
EKLLNVVNS LDDSVLQRV TPQLLGEWP NTYVYTKSI 
SESLIRSID TFPIAIIRP GIILSSAKE PMPGWIDNF 
YGPVGIATG AGVGVLKTF HAKRDAVAA MVPVDYVVN 
ALLSIMWRI GTEKTKTPT VYNFAGHKT NKITWGQFT 
DNLRELYWI AIPKCLFWY VSFVLRENQ ISYKLTTFF 
SHTLFGYII DFVLFCLGK RTLAVKGYA RLHKTLDLI 
AWFSTRTWD FDDNNILKL WSEMGEEDK KIFDFNMEK 
LNWDAYLRD SAFGMRYFL LKESLETVP EAKRKLRIM 
FVAHYAIII LFWFLMYKL MTFMYGLFV
    CDS sequence
    • >TC010578 RA
      atgctagaa gctagagcc atgaagagc caaattgct 
gaatttttc gcaaaccaa acggttttt ctaactggg 
ggaggaggc tttttgggt aaagtcttg atcgaaaaa 
ctcctacga gaatgttcc gatgtgtcg aaaatttat 
atgctgatg cggcaaaag aagggaaaa acaccccag 
cagcgtgtg agcgaagtg ttcgacttt ccttgtttt 
gattacatc aaagccaac aatgcggct atcattaag 
aaagtgcac gtcattcat ggtgactgt cagaaaccg 
gatttggga ttggaccct gaagatgtg agggtgtta 
aaagccgaa actacgtgc gttattcac gctgcagca 
agtgttagg tttgaccaa tcgctgaaa gaggctagt 
tacaatgtt cgtgccaca agagatatc ctggaattg 
gctaaacaa atggcaaat ttgaaatgt ttcattttc 
gtttccacg gcttattcc aaccctctt aatgctcac 
gtgaaagaa gatttttac gagccacca atcgaagcc 
gaaaagcta ctaaatgtt gtgaattcc ctcgacgat 
agtgtgctt caaagagtc acaccacaa cttttggga 
gaatggccc aatacttac gtttacacc aaatcaatt 
tccgaaagt ttgatacga tctattgat acttttccc 
attgccatc atacgtcca ggaattatt cttagttcg 
gctaaggaa ccaatgcca ggctggatt gataatttc 
tatggtcct gttggtata gccacgggt gcgggtgtg 
ggagttttg aaaactttc cacgcaaaa cgcgatgct 
gtggccgcc atggtacca gttgattat gtcgttaat 
gcccttttg tcaattatg tggagaata ggtaccgaa 
aaaacgaaa actccaaca gtgtacaat tttgctggg 
cacaaaacc aacaaaatc acttgggga cagtttacg 
gataattta agagagctt tattggata gctatccct 
aaatgtctt ttttggtac gtctcgttt gtactgaga 
gaaaaccaa atttcctac aaactgaca acatttttt 
tcgcatacc ctctttggt tacatcatt gattttgtc 
ctcttctgt ttagggaaa cgcactctg gcggttaaa 
gggtatgct cgactgcat aaaaccctt gatttaatc 
gcatggttt tcaacaagg acatgggac ttcgatgac 
aataatatc ttaaaacta tggagcgaa atgggggaa 
gaagataaa aaaatattt gatttcaat atggaaaaa 
ctaaactgg gacgcttac ctacgcgac tctgctttt 
gggatgaga tattttttg ctgaaggaa tcattagag 
acagttcct gaagccaaa agaaaactc agaattatg 
tttgttgcg cattacgcc attattata ttattttgg 
ttcttgatg tacaagctt atgacattt atgtatgga 
ttgtttgtc taa
    mRNA sequence
    • >TC010578 RA
      gatacaccc agacccaag tagtaaatg cggacccgt 
cctagaaat gcattaacg attcgcgag cattagtct 
gcgagttct tcgcagttg cggcgaata tttcatcgg 
caaagattt aatactaga ttaatagca aatgcccct 
taaaaattc accagtcga cgccactga ataacattt 
gcaaattac cattcaatt ttgacaatg ctagaagct 
agagccatg aagagccaa attgctgaa tttttcgca 
aaccaaacg gtttttcta actggggga ggaggcttt 
ttgggtaaa gtcttgatc gaaaaactc ctacgagaa 
tgttccgat gtgtcgaaa atttatatg ctgatgcgg 
caaaagaag ggaaaaaca ccccagcag cgtgtgagc 
gaagtgttc gactttcct tgttttgat tacatcaaa 
gccaacaat gcggctatc attaagaaa gtgcacgtc 
attcatggt gactgtcag aaaccggat ttgggattg 
gaccctgaa gatgtgagg gtgttaaaa gccgaaact 
acgtgcgtt attcacgct gcagcaagt gttaggttt 
gaccaatcg ctgaaagag gctagttac aatgttcgt 
gccacaaga gatatcctg gaattggct aaacaaatg 
gcaaatttg aaatgtttc attttcgtt tccacggct 
tattccaac cctcttaat gctcacgtg aaagaagat 
ttttacgag ccaccaatc gaagccgaa aagctacta 
aatgttgtg aattccctc gacgatagt gtgcttcaa 
agagtcaca ccacaactt ttgggagaa tggcccaat 
acttacgtt tacaccaaa tcaatttcc gaaagtttg 
atacgatct attgatact tttcccatt gccatcata 
cgtccagga attattctt agttcggct aaggaacca 
atgccaggc tggattgat aatttctat ggtcctgtt 
ggtatagcc acgggtgcg ggtgtggga gttttgaaa 
actttccac gcaaaacgc gatgctgtg gccgccatg 
gtaccagtt gattatgtc gttaatgcc cttttgtca 
attatgtgg agaataggt accgaaaaa acgaaaact 
ccaacagtg tacaatttt gctgggcac aaaaccaac 
aaaatcact tggggacag tttacggat aatttaaga 
gagctttat tggatagct atccctaaa tgtcttttt 
tggtacgtc tcgtttgta ctgagagaa aaccaaatt 
tcctacaaa ctgacaaca tttttttcg cataccctc 
tttggttac atcattgat tttgtcctc ttctgttta 
gggaaacgc actctggcg gttaaaggg tatgctcga 
ctgcataaa acccttgat ttaatcgca tggttttca 
acaaggaca tgggacttc gatgacaat aatatctta 
aaactatgg agcgaaatg ggggaagaa gataaaaaa 
atatttgat ttcaatatg gaaaaacta aactgggac 
gcttaccta cgcgactct gcttttggg atgagatat 
tttttgctg aaggaatca ttagagaca gttcctgaa 
gccaaaaga aaactcaga attatgttt gttgcgcat 
tacgccatt attatatta ttttggttc ttgatgtac 
aagcttatg acatttatg tatggattg tttgtctaa 
ctaaaaata taaaaaaaa ctgtacc

    If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
    Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.

    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY