Status
Please wait ...
Gene information
General information
TC010543 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007418.3: 15000420..15013674
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
      		TC010543
      Gene ontology

      GO terms for Tribolium

      • {{ goTerm.term }}
        ({{ goTerm.evidence }}){{ goTerm.evidenceTooltip }}
        {{goTerm.showAll ? '[-]' : '[+]'}}
        Status: {{ goTerm.status }}
        Evidence: {{ goTerm.evidence }} ({{ goTerm.evidenceTooltip }})
        Reference: {{ goTerm.referenceText }}
        Quotation: {{ goTerm.quotation }}
        Submitter: {{ goTerm.name }}

      There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


      GO terms for the homologous Drosophila genes

      Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


      Gene
      {{ goGene }}
      The Tribolium gene the GO term is assigned to.
      GO ID *
      {{ blurIdResult }}
      The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
      Evidence
      {{ blurEvidenceResult }}
      The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
      Reference *
      {{ blurReferenceResult }}
      The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
      Quotation
      If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
      Name
      You may enter your name. The contact information can help us to clarify any questions. If you agree, we may show your name on this page to honor your contribution.
      Email
      We will use your email address only for possible questions regarding this annotation. We will never show your address or give it away.
      Publish name
      If you have entered your name and agree by marking the checkbox. we might show your name on this page to honor your contribution.
        {{ unavailableText }}

      * : mandatory fields
      For help on how to submit larger datasets or non experimental data please contact us.
      iBeetle screen iB_04867

      Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

      iB sequence
      Phenotype after pupal injection
      Usually 10 injected animals

      Pupal injection procedure

      Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

      3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

      9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

      11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

      Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

      13 dpi: Egg productivity and Ovary analysis
      The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

      14 dpi: Analysis of embryonic musculature and early embryonic development
      Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

      15 dpi: Analysis of larval instar 1 cuticle
      Offspring of injected females were analysed and cuticle phenotypes were annotated.

      22 dpi: Stink gland analysis
      Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

      Terms used in the pupal injection procedure

      larval pantagmatic defects
      At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
      empty eggs
      Just empty shells are visible, no cuticle has been developed.
      strong defects
      L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
      strongly fragmented (cuticle crumbs)
      No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
      cuticle remnants (with unidentifiable segments)
      Segments or parts of appendages are recognizable, but identity is not clear.
      cuticle remnants (with some identifiable segments)
      At least one segment or appendage is clearly regonizable.
      number of eggs on slide
      affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
      For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
      total number of affected eggs/embryos/larvae
      Summary of all different phenotypes/ phenotypic series which were annotated.
      inside-out
      The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
      starved
      Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
      eclosion not fulfilled
      The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
      Please see the help page for more information
      Metamorphosis and survival

      Lethality 11 days after pupal injection: 20.0% (includes death as pupa, adult)

      adult lethality - Number of animals showing the phenotype: 2 (9 dpi)
      Days post injection

      Analysis of larval stage 1 cuticle
      number of eggs/embryos/larvae on slide: < 20
      Phenotype after larval injection
      Usually 10 injected animals

      Larval injection procedure

      Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

      11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

      16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

      19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

      22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

      41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

      Terms used in the larval injection procedure

      pupal/ adult pantagmatic defects
      At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
      pupal molt not fulfilled
      The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
      eclosion not fulfilled
      The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
      starved
      Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
      Metamorphosis and survival

      Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
      Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

      RNAi sequence
      Primers
      Left: Right:
      Protein sequence
      • >TC010543 RA
        MKPITFENL RRLVGGGRK KREKESSFK RSDSFKRIS 
IRKSYLDRG KKKHISKLE VATQTVAEE DLLKLIETT 
KVDSCVQVD KSDLSGATY ETTKCTKSK KSDSKSGPG 
QSVIAYGQW LKGIRKDDS AVVSGIKGS ERTVIYVPA 
SDEVQPSSP IIQLSCSPV FRKKSPLSK RKSKQSSPT 
LQRKESNDS AVEMFPWGD SSEVKKSPL FRRKSRQSP 
APLMPDSGT EEMCSLSIS LGRIWMDAP QGMAPRSLE 
MPKTSGSSA PAHHSLDSA LKDLRDDPI VINRLQKRP 
TPPVARTLS STSNTTVST GLFSSKDSG FSFSTTAPK 
LSDFNSHVP VSTSRGFFR KKKPKPKLS VSRDGYFKR 
TSGALIETK RSSVRRRSS RKKKSKTKK NRNSTKTDL 
YQVVVSRPP RSLRSLKLD PMIFVPPEK RKTSVTRKQ 
SFKIGMREI RNFDPLDSA MYSRSVNES ADEGLYESL 
PGEYDDLSD EQPLSGRIS RISLREDDY DLPSNDFAP 
VSEESIASD EPNSSSSPY MVPGVSPVP RRRPVRRKK 
SGLTHKKSI TYVVKPNIK RVSSTLRRP AKKLGE
      CDS sequence
      • >TC010543 RA
        atgaaacca attacgttc gaaaatctg cgccgactg 
gtgggtgga ggtcggaaa aaacgcgaa aaagaatca 
tcttttaaa cgaagtgat tcatttaag cgaatatcc 
ataagaaag agttaccta gatagaggc aagaaaaaa 
cacatctcg aagttggaa gtggccacg caaacagtc 
gccgaagag gatctctta aagttaatc gaaacaacg 
aaagtcgat tcgtgcgta caagtggac aaatccgac 
ttgagtggc gccacttac gaaaccacc aagtgcacc 
aagtcgaag aaaagtgat tcgaaaagt ggaccggga 
caaagtgtt atcgcgtac ggtcagtgg ttgaaaggc 
atacgcaaa gacgactcg gcggtggtg tctggaatc 
aagggctct gaacgaact gttatttac gtcccagcc 
tctgacgag gtgcagcca agctcccct atcatccag 
ctgtcttgc tcaccagtt tttcggaaa aaatctccc 
ttgtcgaaa cgcaagagt aaacaaagc agtccgact 
ctgcagcgg aaggaaagc aatgactcc gccgtggag 
atgtttccg tggggagat tcctccgag gtgaaaaaa 
tcccccctg tttaggaga aaatcccga cagagtcct 
gcacctcta atgcccgat tccgggaca gaggagatg 
tgttccttg tcgataagt ttggggagg atctggatg 
gacgccccc caaggcatg gccccgaga agcctcgaa 
atgccgaaa acctccgga tcgtcagcg cctgcacac 
cactctctg gacagtgcc ttgaaggac ttacgggac 
gaccctatc gtgatcaac cgtctccaa aagagaccc 
actcctcct gttgctcgg acattatca tcaaccagc 
aacacgaca gtgtccacc ggtctcttc tcgagcaaa 
gattccggt ttttctttt tcaacgaca gctcctaaa 
ttaagtgat ttcaattcg cacgtgcca gtatctaca 
tcccgtggt tttttccgg aagaaaaaa cccaaaccg 
aagctctct gtcagcagg gacggctac ttcaagcgt 
acaagtggc gctctaata gaaactaag cggagttca 
gttcggcgg agaagcagc cgcaagaaa aagtcgaaa 
acgaagaaa aaccgaaac tccaccaag accgacctc 
tatcaagtg gtcgttagc cgtccgccc aggtcgtta 
cgttcctta aaactggac cccatgata ttcgttccg 
ccagaaaag cgaaaaact tccgtgacc cgaaagcag 
tcatttaag atcggaatg cgtgaaata aggaatttc 
gatcctctg gatagtgcg atgtattcg aggagtgtg 
aacgagagc gccgacgag gggctctac gagagcctc 
cccggggaa tacgacgac ctctccgac gagcagcct 
ctcagtgga cgcatatca cgcatcagc ctacgcgag 
gacgactac gacttgccc tctaatgac ttcgctccg 
gtgtcggag gaatcgatc gccagcgat gagccgaac 
tcttcttcg agcccttat atggtcccc ggagtgtcg 
cccgtgccg aggaggcgg ccggtgcgc cggaagaag 
tcaggtttg acgcataag aagagtatc acctacgtg 
gtcaagcct aatattaag agagtttcg tcgacgttg 
cgcagacct gccaagaaa ttaggtgag taa
      mRNA sequence
      • >TC010543 RA
        gcgttcttc tatcaacat cgaagagtt tgttgtgcg 
ttagttgtg tgtttagtg atgtttttc acattttgg 
acggtgttt gtgacggaa attcttctt tgtgcggtg 
gaatgtgac cgaggattg tgcggtgtg tcttcaaga 
ccctagatt atggttgag aacgactgt gcgttggac 
tctccagtc gcaatgaaa ttggaggaa tggctgaac 
gttgtgcat tcaaatgca aacccaccg aacgtgtgg 
tcaagtaga agaattcca gtgttactc gagacctag 
agcggaaag aagcaaaca tgaaaccaa ttacgttcg 
aaaatctgc gccgactgg tgggtggag gtcggaaaa 
aacgcgaaa aagaatcat cttttaaac gaagtgatt 
catttaagc gaatatcca taagaaaga gttacctag 
atagaggca agaaaaaac acatctcga agttggaag 
tggccacgc aaacagtcg ccgaagagg atctcttaa 
agttaatcg aaacaacga aagtcgatt cgtgcgtac 
aagtggaca aatccgact tgagtggcg ccacttacg 
aaaccacca agtgcacca agtcgaaga aaagtgatt 
cgaaaagtg gaccgggac aaagtgtta tcgcgtacg 
gtcagtggt tgaaaggca tacgcaaag acgactcgg 
cggtggtgt ctggaatca agggctctg aacgaactg 
ttatttacg tcccagcct ctgacgagg tgcagccaa 
gctccccta tcatccagc tgtcttgct caccagttt 
ttcggaaaa aatctccct tgtcgaaac gcaagagta 
aacaaagca gtccgactc tgcagcgga aggaaagca 
atgactccg ccgtggaga tgtttccgt ggggagatt 
cctccgagg tgaaaaaat cccccctgt ttaggagaa 
aatcccgac agagtcctg cacctctaa tgcccgatt 
ccgggacag aggagatgt gttccttgt cgataagtt 
tggggagga tctggatgg acgcccccc aaggcatgg 
ccccgagaa gcctcgaaa tgccgaaaa cctccggat 
cgtcagcgc ctgcacacc actctctgg acagtgcct 
tgaaggact tacgggacg accctatcg tgatcaacc 
gtctccaaa agagaccca ctcctcctg ttgctcgga 
cattatcat caaccagca acacgacag tgtccaccg 
gtctcttct cgagcaaag attccggtt tttcttttt 
caacgacag ctcctaaat taagtgatt tcaattcgc 
acgtgccag tatctacat cccgtggtt ttttccgga 
agaaaaaac ccaaaccga agctctctg tcagcaggg 
acggctact tcaagcgta caagtggcg ctctaatag 
aaactaagc ggagttcag ttcggcgga gaagcagcc 
gcaagaaaa agtcgaaaa cgaagaaaa accgaaact 
ccaccaaga ccgacctct atcaagtgg tcgttagcc 
gtccgccca ggtcgttac gttccttaa aactggacc 
ccatgatat tcgttccgc cagaaaagc gaaaaactt 
ccgtgaccc gaaagcagt catttaaga tcggaatgc 
gtgaaataa ggaatttcg atcctctgg atagtgcga 
tgtattcga ggagtgtga acgagagcg ccgacgagg 
ggctctacg agagcctcc ccggggaat acgacgacc 
tctccgacg agcagcctc tcagtggac gcatatcac 
gcatcagcc tacgcgagg acgactacg acttgccct 
ctaatgact tcgctccgg tgtcggagg aatcgatcg 
ccagcgatg agccgaact cttcttcga gcccttata 
tggtccccg gagtgtcgc ccgtgccga ggaggcggc 
cggtgcgcc ggaagaagt caggtttga cgcataaga 
agagtatca cctacgtgg tcaagccta atattaaga 
gagtttcgt cgacgttgc gcagacctg ccaagaaat 
taggtgagt aatattgga gaatttccc gagcgatct 
tttatttct gacacggat tagttcgat tttaattaa 
aaaagaatt aatctccaa caatcttcc attcgagtt 
agtcgagtg ggatgtgca aggttgaag aaatgtatg 
ttggaatg

      If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
      Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.

      The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY