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Gene information
General information
TC010484 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NW_015451027.1: 174710..184673
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
      TC010484
      Gene ontology

      GO terms for Tribolium

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      There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


      GO terms for the homologous Drosophila genes


      Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


      Gene
      {{ goGene }}
      The Tribolium gene the GO term is assigned to.
      GO ID *
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      The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
      Evidence
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      The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
      Reference *
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      The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
      Quotation
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      Name
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      Email
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      * : mandatory fields
      For help on how to submit larger datasets or non experimental data please contact us.
      iBeetle screen iB_04850

      Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

      iB sequence
      Phenotype after pupal injection
      Usually 10 injected animals

      Pupal injection procedure

      Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

      3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

      9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

      11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

      Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

      13 dpi: Egg productivity and Ovary analysis
      The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

      14 dpi: Analysis of embryonic musculature and early embryonic development
      Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

      15 dpi: Analysis of larval instar 1 cuticle
      Offspring of injected females were analysed and cuticle phenotypes were annotated.

      22 dpi: Stink gland analysis
      Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

      Terms used in the pupal injection procedure

      larval pantagmatic defects
      At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
      empty eggs
      Just empty shells are visible, no cuticle has been developed.
      strong defects
      L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
      strongly fragmented (cuticle crumbs)
      No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
      cuticle remnants (with unidentifiable segments)
      Segments or parts of appendages are recognizable, but identity is not clear.
      cuticle remnants (with some identifiable segments)
      At least one segment or appendage is clearly regonizable.
      number of eggs on slide
      affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
      For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
      total number of affected eggs/embryos/larvae
      Summary of all different phenotypes/ phenotypic series which were annotated.
      inside-out
      The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
      starved
      Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
      eclosion not fulfilled
      The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
      Please see the help page for more information
      Metamorphosis and survival

      Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)

      adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
      Days post injection


      Fertility
      eggs lost during procedure: potentially due to defects in egg-shells egg-morphology or egg-size, (14 dpi)
      Analysis of larval stage 1 cuticle
      number of eggs/embryos/larvae on slide: < 50
      larva appendages shape irregular - Penetrance (percentage of animals/eggs on slide): 50% - 80%
      head appendages partially shape irregular - Penetrance (percentage of animals/eggs on slide): 50% - 80%

      head appendages sometimes not present - Penetrance (percentage of animals/eggs on slide): 30% - 50%

      legs partially shape irregular - Penetrance (percentage of animals/eggs on slide): 30% - 50%

      affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): 50% - 80%
      Phenotype after larval injection
      Usually 10 injected animals

      Larval injection procedure

      Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

      11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

      16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

      19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

      22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

      41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

      Terms used in the larval injection procedure

      pupal/ adult pantagmatic defects
      At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
      pupal molt not fulfilled
      The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
      eclosion not fulfilled
      The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
      starved
      Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
      Metamorphosis and survival

      Lethalities 11 days after larval injection: 0.0% (includes death as larva, prepupa, pupa)
      Lethalities 22 days after larval injection: 20.0% (includes death as larva, prepupa, pupa, adult)

      eclosion not fulfilled (died as pupa) - Number of animals showing the phenotype: 1 (16 dpi)
      Days post injection


      adult lethality - Number of animals showing the phenotype: 1 (19 dpi)
      Days post injection


      Adult morphology
      abdominal odoriferous glands partially colour darker - Number of animals showing the phenotype: 4 (41 dpi)
      Days post injection



      Fertility
      egg production: number <50% of expected -
      ovary without detectable defects - Number of animals showing the phenotype: 3
      RNAi sequence
      Primers
      Left: Right:
      Protein sequence
      • >TC010484 RA
        MSNRPILSR PRTRIYDAN YNIGQNYYR SALDSIDRK 
        YSPRAPSPL RPSIARDIL DRHDEAFAD EDLATSRLR 
        AEKTIRQNH LFDSRGGRI AQRALDLVE NDIDEETAS 
        TLKRIRANK KVHMLDDSD FDSTVDNIN SHRLLERSE 
        KALRSVGLN ENSRRALDE DVSIKRRSL KVSFENETQ 
        NGDMVKWSP LQQRSDERE SAAAIRARK SRDRILDLE 
        DEMAAMTEK QAARERRAA RFKALVAES TEQTEAAQS 
        ALQAISFKS RREQRTLEE
      CDS sequence
      • >TC010484 RA
        atgtcgaac agaccgatc ctcagcaga ccccgaacc 
        cgcatctac gacgccaat tacaacatt ggccaaaac 
        tattacaga tcagctttg gacagcata gaccgcaaa 
        tactcacct cgagctccc tctcctctg cggccctca 
        atcgctcgt gacatcctc gatcgtcat gacgaagct 
        ttcgccgac gaagacttg gcaacttct cgtctccga 
        gccgaaaaa acaatccga caaaaccac cttttcgac 
        tcccgtgga ggacgcatt gctcagcgt gctttagat 
        ttagttgaa aatgacata gacgaagag actgcttcg 
        actttgaaa cgcatcaga gccaacaag aaagtgcat 
        atgctcgat gactccgac tttgacagt accgtcgac 
        aacattaac tcacaccgt ctgttggaa cggtccgaa 
        aaggcgctc cgaagcgtc ggtcttaac gaaaactca 
        cgtcgggct ttggacgaa gacgtttcc atcaagcga 
        cgttcgctc aaagtttcg ttcgaaaac gagacccaa 
        aacggggac atggtgaag tggagtcct ctccagcaa 
        cgttccgat gagagggag agtgctgct gccataagg 
        gcacgcaaa tcaagggac aggattctt gatttggag 
        gacgaaatg gccgcaatg accgaaaaa caagcagca 
        agggagcgc agagcggct aggtttaag gcattggtt 
        gctgaaagc acggaacaa actgaagcg gcacaatcg 
        gcccttcaa gcgattagc tttaagtcc aggagggaa 
        caaaggacc ttggaggag taa
      mRNA sequence
      • >TC010484 RA
        ttggtggga gaatcagca tcatcctca tcctgcaga 
        tactttatt tcaattctg aggcttatg ccggttgtg 
        tgtgagggt tttaatcac taattgtaa caaataatt 
        aattcacac agaaaaatg tcgaacaga ccgatcctc 
        agcagaccc cgaacccgc atctacgac gccaattac 
        aacattggc caaaactat tacagatca gctttggac 
        agcatagac cgcaaatac tcacctcga gctccctct 
        cctctgcgg ccctcaatc gctcgtgac atcctcgat 
        cgtcatgac gaagctttc gccgacgaa gacttggca 
        acttctcgt ctccgagcc gaaaaaaca atccgacaa 
        aaccacctt ttcgactcc cgtggagga cgcattgct 
        cagcgtgct ttagattta gttgaaaat gacatagac 
        gaagagact gcttcgact ttgaaacgc atcagagcc 
        aacaagaaa gtgcatatg ctcgatgac tccgacttt 
        gacagtacc gtcgacaac attaactca caccgtctg 
        ttggaacgg tccgaaaag gcgctccga agcgtcggt 
        cttaacgaa aactcacgt cgggctttg gacgaagac 
        gtttccatc aagcgacgt tcgctcaaa gtttcgttc 
        gaaaacgag acccaaaac ggggacatg gtgaagtgg 
        agtcctctc cagcaacgt tccgatgag agggagagt 
        gctgctgcc ataagggca cgcaaatca agggacagg 
        attcttgat ttggaggac gaaatggcc gcaatgacc 
        gaaaaacaa gcagcaagg gagcgcaga gcggctagg 
        tttaaggca ttggttgct gaaagcacg gaacaaact 
        gaagcggca caatcggcc cttcaagcg attagcttt 
        aagtccagg agggaacaa aggaccttg gaggagtaa 
        gggctccga tagggcttg tagaaagaa ttgatttgc 
        gatcgtgta ttgttcgtt tttgttatc agcattttc 
        ttattgttc tgcttcagg taaatataa tttatgtat 
        aatgagaaa taaactgta atttacgaa
      The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY