Status
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Gene information
General information
TC010328 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007418.3: 25018170..25029660
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC010328
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes


    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
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    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
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    Email
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    Publish name
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_04812

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)

    adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 10.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 10.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection


    pupal molt delayed (still larva) - Number of animals showing the phenotype: 2 (11 dpi)
    Days post injection


    eclosion delayed (still pupa) - Number of animals showing the phenotype: 2 (16 dpi)
    Days post injection


    eclosion delayed (still pupa) - Number of animals showing the phenotype: 2 (19 dpi)
    Days post injection


    eclosion delayed (still pupa) - Number of animals showing the phenotype: 2 (22 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 2 (41 dpi)
    Days post injection


    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC010328 RA
      MDLKGKVAL VTGGASGYG KEYCKELFK HGCKVSICD 
      INTDAGEDL LHQLSKTAK DRVIFCPCD VTDYPQFEE 
      AFQTTIQKL GGVDIVINS ASVMNDRLW ELEVDVNLN 
      GVIRGLLLA FRFLGRDRG GPGGVVVNT GSSCSTHPF 
      VSLPVFTAT KHAVAALTR SYGDQYHVN LTGVRVVAL 
      CPSPTEAAL SGDPRKRIL SGEYEQAWQ KDISSTSAI 
      KAENLGKAL IEIIQKAPS GSSWLVESS TPPKEIVLF 
      S
    CDS sequence
    • >TC010328 RA
      atggattta aaaggtaaa gtggctcta gtaaccggt 
      ggtgcatct ggatacggt aaagagtac tgtaaggag 
      cttttcaag cacggatgc aaggtgtct atatgtgat 
      atcaacaca gacgcaggc gaagacttg ctccaccag 
      ttgtcaaag actgccaaa gacagagtg attttctgc 
      ccatgtgat gtaaccgac tatccacaa ttcgaagag 
      gctttccaa acgacaatt cagaaactc ggaggcgtc 
      gacattgtt ataaacagc gcgtcggtg atgaatgac 
      cggctttgg gagctcgaa gtagacgtc aatttgaac 
      ggtgtaatc agaggcttg ctcctggcg ttccgtttc 
      ctgggccgg gacaggggc ggtccggga ggcgttgta 
      gtgaacacg ggctccagc tgcagcacg caccctttc 
      gtctctttg ccggtcttc acggccact aagcacgcg 
      gtggcggct ttaacccgc tcgtatgga gatcaatat 
      catgtcaac ctaacgggg gtccgtgtg gtcgcctta 
      tgcccttcg cccaccgaa gccgctctc tcgggcgat 
      ccccgtaaa aggattctc agcggggaa tacgagcag 
      gcctggcag aaggatatc agcagtaca tctgcaata 
      aaggccgaa aatttgggc aaggcgttg atagagatt 
      attcaaaaa gcgccgagt ggttccagc tggctggtg 
      gagagttcg acacctccg aaggaaatt gttctattt 
      tcataa
    mRNA sequence
    • >TC010328 RA
      tgatgattg tattttatg tcatttatg ttcttgacg 
      tcgcgacgc ttgcagggc gcggccctc agtctgcat 
      aaactcgcc aataataac acatctact caattttgg 
      aatctttat tttcataga gttgtagtt ttttgtaaa 
      tatttattg taaatataa tggatttaa aaggtaaag 
      tggctctag taaccggtg gtgcatctg gatacggta 
      aagagtact gtaaggagc ttttcaagc acggatgca 
      aggtgtcta tatgtgata tcaacacag acgcaggcg 
      aagacttgc tccaccagt tgtcaaaga ctgccaaag 
      acagagtga ttttctgcc catgtgatg taaccgact 
      atccacaat tcgaagagg ctttccaaa cgacaattc 
      agaaactcg gaggcgtcg acattgtta taaacagcg 
      cgtcggtga tgaatgacc ggctttggg agctcgaag 
      tagacgtca atttgaacg gtgtaatca gaggcttgc 
      tcctggcgt tccgtttcc tgggccggg acaggggcg 
      gtccgggag gcgttgtag tgaacacgg gctccagct 
      gcagcacgc accctttcg tctctttgc cggtcttca 
      cggccacta agcacgcgg tggcggctt taacccgct 
      cgtatggag atcaatatc atgtcaacc taacggggg 
      tccgtgtgg tcgccttat gcccttcgc ccaccgaag 
      ccgctctct cgggcgatc cccgtaaaa ggattctca 
      gcggggaat acgagcagg cctggcaga aggatatca 
      gcagtacat ctgcaataa aggccgaaa atttgggca 
      aggcgttga tagagatta ttcaaaaag cgccgagtg 
      gttccagct ggctggtgg agagttcga cacctccga 
      aggaaattg ttctatttt cataattca aaacttggt 
      ttaataatc acgctcatt tctgttcgt ttacagctt 
      cgcaacgcc atttcacgt gtcacttgt agcgattaa 
      tatagttag actaaataa tgcttgtac tataaagca 
      tgatacagg ttagatgtt agtcggtga gattttatt 
      tcaaaatta tatcatcga ttgattgtt atcattatt 
      gctaacagc tgaaatttt tatctgatt attatgttt 
      tttataaaa agagtggaa ctcaaaact attattaat 
      tgtactgct tattaactt tataaaatg attgtaact 
      ttttttaat aaactgggt tgaaacct
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY