Status
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Gene information
General information
TC009525 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007422.5: 1926945..1931344
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    		TC009525
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes

    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
    {{ goGene }}
    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
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    Email
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_04650

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)

    adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
    Days post injection

    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 50
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 0.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 0.0% (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC009525 RA
      MFGGSLDPP KHAKRSRPN PMTYDIQLP CITPGVYGH 
RGRQPNTDH HVRLLHYRQ HLRDADSEF LASEAKRLL 
KETVTAKYD KHAEKKVFQ RHIQERFKE KVKAYEETI 
EKRRLKLKE LLCREEQEF IIETIDKAQ KGVDSKMEE 
MKNKAQLLK AQREAERLE IVNQKRIQQ YIDGCVELR 
PVVYQRNLI DSKNAQLQQ MKENQMRKE SERELEVMW 
HNLMKKEQE AKMEKEVQD LLKQNRAMQ ETMQTWEKQ 
IHGKELLKQ EAEKVAAED RIEMIKLQE QIRREEIEE 
LDAKRRKRD QVAKELREQ IEVQERFIA QRKKEEEAL 
NNAMSRLAE VELEKERQK IKDTTSLAK RETAIYRNH 
LKELEVERK REEEQLDKL LEEHRKMIE KKQEEAFCK 
LKKARQELQ KNVLAERAQ QLEYKRQEA ENQLRLKEA 
ENELLRMAW ESNERLQAE HDRLQALQV KQYREDLRQ 
QIEYNNEQR KLEKKKLER ELAEGLAEE ERRRQHVLE 
LIDARLHDP AFQHPFRRV LERPSCPCP NPTT
    CDS sequence
    • >TC009525 RA
      atgtttggg ggcagcttg gaccccccg aaacatgcg 
aaacggtca agacccaac cccatgacc tacgacata 
caactgcca tgcataaca ccaggagtt tacggacat 
cgaggtcgt caaccgaat accgaccac cacgtccgc 
ttgttacac taccggcag catctccgt gatgccgac 
agtgaattt ctagcttcc gaagccaaa cgactgctc 
aaagagact gtgacagcc aaatacgac aaacatgcc 
gaaaaaaag gtcttccaa agacatatc caggaacga 
ttcaaggag aaagttaaa gcttacgaa gagacaatc 
gagaagaga cgtctaaag ttgaaggaa ctgttgtgc 
cgtgaagaa caagaattt ataattgaa actattgac 
aaagcccag aaaggcgtt gattccaaa atggaagag 
atgaaaaat aaagcacag ttgttgaaa gcgcagcgt 
gaagctgaa cgacttgaa attgtaaac cagaaacgg 
atccagcaa tacattgac ggttgcgtc gagttgcgc 
ccagtcgtc taccaacga aacctcata gacagcaaa 
aacgcccaa ttgcaacaa atgaaggaa aatcagatg 
cgaaaagag tcggaacgc gagcttgaa gtcatgtgg 
cacaacctc atgaagaaa gaacaagaa gctaagatg 
gagaaagaa gtgcaagat ttgcttaaa caaaaccgg 
gcgatgcaa gagaccatg caaacgtgg gagaagcaa 
atccacggc aaggaactc ctgaagcaa gaggcggaa 
aaagtggcc gccgaagac cgcatcgag atgattaaa 
ctccaagag cagattcgg cgcgaagag attgaagaa 
ttggacgcc aagcggcga aagcgcgac caagtggcc 
aaagaactg agggagcaa atcgaagtc caggagcgg 
tttatcgcg caacggaag aaagaggag gaagctttg 
aacaatgca atgagtcgc ttggccgaa gtggagttg 
gagaaggag aggcagaaa attaaggac acaaccagt 
ttggcgaaa cgtgaaact gcgatctac cgcaaccat 
ttgaaggag ttggaggtg gagaggaag agggaggag 
gagcagttg gataagctg ttggaagag caccgcaaa 
atgattgag aagaagcag gaggaggct ttttgcaag 
ttgaagaaa gcgcgtcaa gagttgcaa aagaacgtt 
ttggcagaa agggcccaa cagttggag tacaagcga 
caggaggct gagaatcaa ctcaggctg aaagaggct 
gagaatgag ctgttgagg atggcttgg gagagcaac 
gagcggctt caggcggaa catgaccgc ctacaggcc 
cttcaggtc aagcaatat cgcgaggat ttgcggcaa 
cagattgaa tataacaac gagcaaagg aaacttgag 
aaaaaaaaa ctggaacgg gagctagct gagggactt 
gctgaggaa gagcgccgc cgccaacac gtcctggag 
ctgattgat gccagacta cacgacccc gctttccag 
catccgttc cgaagagtt ttagaacgt ccgagctgt 
ccttgcccc aacccaacc acctga
    mRNA sequence
    • >TC009525 RA
      tcttaacag tcacttgga caagttgga gatgtttgg 
gggcagctt ggacccccc gaaacatgc gaaacggtc 
aagacccaa ccccatgac ctacgacat acaactgcc 
atgcataac accaggagt ttacggaca tcgaggtcg 
tcaaccgaa taccgacca ccacgtccg cttgttaca 
ctaccggca gcatctccg tgatgccga cagtgaatt 
tctagcttc cgaagccaa acgactgct caaagagac 
tgtgacagc caaatacga caaacatgc cgaaaaaaa 
ggtcttcca aagacatat ccaggaacg attcaagga 
gaaagttaa agcttacga agagacaat cgagaagag 
acgtctaaa gttgaagga actgttgtg ccgtgaaga 
acaagaatt tataattga aactattga caaagccca 
gaaaggcgt tgattccaa aatggaaga gatgaaaaa 
taaagcaca gttgttgaa agcgcagcg tgaagctga 
acgacttga aattgtaaa ccagaaacg gatccagca 
atacattga cggttgcgt cgagttgcg cccagtcgt 
ctaccaacg aaacctcat agacagcaa aaacgccca 
attgcaaca aatgaagga aaatcagat gcgaaaaga 
gtcggaacg cgagcttga agtcatgtg gcacaacct 
catgaagaa agaacaaga agctaagat ggagaaaga 
agtgcaaga tttgcttaa acaaaaccg ggcgatgca 
agagaccat gcaaacgtg ggagaagca aatccacgg 
caaggaact cctgaagca agaggcgga aaaagtggc 
cgccgaaga ccgcatcga gatgattaa actccaaga 
gcagattcg gcgcgaaga gattgaaga attggacgc 
caagcggcg aaagcgcga ccaagtggc caaagaact 
gagggagca aatcgaagt ccaggagcg gtttatcgc 
gcaacggaa gaaagagga ggaagcttt gaacaatgc 
aatgagtcg cttggccga agtggagtt ggagaagga 
gaggcagaa aattaagga cacaaccag tttggcgaa 
acgtgaaac tgcgatcta ccgcaacca tttgaagga 
gttggaggt ggagaggaa gagggagga ggagcagtt 
ggataagct gttggaaga gcaccgcaa aatgattga 
gaagaagca ggaggaggc tttttgcaa gttgaagaa 
agcgcgtca agagttgca aaagaacgt tttggcaga 
aagggccca acagttgga gtacaagcg acaggaggc 
tgagaatca actcaggct gaaagaggc tgagaatga 
gctgttgag gatggcttg ggagagcaa cgagcggct 
tcaggcgga acatgaccg cctacaggc ccttcaggt 
caagcaata tcgcgagga tttgcggca acagattga 
atataacaa cgagcaaag gaaacttga gaaaaaaaa 
actggaacg ggagctagc tgagggact tgctgagga 
agagcgccg ccgccaaca cgtcctgga gctgattga 
tgccagact acacgaccc cgctttcca gcatccgtt 
ccgaagagt tttagaacg tccgagctg tccttgccc 
caacccaac cacctgaaa tgacttgta caacaaaag 
agacattac agaattatt tgaaagttt tatttgttt 
tattgctta atgccagtg acgggaact aattttcgc 
caagattct cgttaaaac ttagcgaca atccaagtt 
tattggctt tgaagtcgt tgcacaacg agtcggaat 
tgcataagg agtatgtga tgttcaatt agaacgtat 
tttacggtg accacattc actgattta acctcgttt 
attctgtaa gaagacacc cctgggttt tgcataaat 
cgcctcagg tgcgaaagt agaagcaac tggagcgcc 
gtgattagt ttaaccttt taatttgtg caagatgaa 
tttatgcaa ttgtaactg gtctgaagg tttccaaga 
ggaaataat aattagtca atcgtttgt aaagtaaca 
aacgctcgg gatttacag aatgggaaa aaattcgta 
accaaatca cagtcgtag aatggacaa gagtgaaag 
ttgatggta ttgttgatc aataataaa taattgcac 
gtggtgtgt gccggaagc gaggcgtgt aaatggaaa 
catttttcg attttaatg agcggttat gttttatgg 
gctctgtgg cgattactt gggcaaata atgagtgtg 
gtttcactt atgaggtga taaaagctc attaaagtt 
gcaaaaaac aaattgatt gaaatttat atactgatg 
acaataaag tgttgttgc gcta

    If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
    Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.

    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY