General information | |||
TC009492 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007422.5: 320125..324834 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC009492 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_04645 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 0.0% (includes death as pupa, adult)
affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): 50% - 80%
remarks: muscle pattern potentially obscured by segmentation defect,
embryo/egg without visible larval cuticle in cuticle preparation - Penetrance (percentage of animals/eggs on slide): less than 30%
thorax segment posterior fused - Penetrance (percentage of animals/eggs on slide): 30% - 50%
abdomen segment number decreased - Penetrance (percentage of animals/eggs on slide): 50% - 80%
affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): more than 80%
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 30.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 40.0% (includes death as larva, prepupa, pupa, adult)
adult nutritional state - Number of animals showing the phenotype: 1 (22 dpi)
- >TC009492 RA
MMEEMFTEL PVPLLSTAA IIRHHTRYQ PYQRLHQPQ HFHTPVQEL HALQQPDHG TTHISCLYP EILAIIFSY LEVRDKGRV AQVCTAWRD AAYNKSVWR GVEAKLHLR RANPSLFAS LVKRGIKRV QVLSLRKSL RDVIQGIPN LESLNLRGC YNVGDVGIS HAFVADSPT LTELDLSLC KQVTDTSLT RIAQHLKNL EVLELGGCS NVTNSGLML IAWGLKKLK RLNLRSCWH VGDQGIQHL ASGNPSLEH LGLQDCQKL SDEALKHAT GLTSLISIN LSFCVSITD SGLKHLAKM TNLRELNLR SCDNISDTG MAFLAEGGS RISSLDVSF CDKIGDQAL VHISQGLFN LRNLLMSAC QLSDEGLAK IANSLHDLE TLNIGQCSR VTDKGLTTI AESLLRLKC IDLYGCTRI TTVGLERIM KLPQLSVLN LGLWHVR
- >TC009492 RA
atgatggag gagatgttc actgagttg cccgtcccc ttgctgtcc acagcggcc atcatccgc caccacacc agataccag ccctaccaa aggctgcac cagccccag cacttccac acgcccgtc caggagctc cacgcgctg caacaacca gaccatggc accacgcac atctcctgt ctctatcca gagatcttg gccatcatc ttcagctac ctggaggtg cgcgacaag ggccgcgtg gcgcaggtt tgcactgcg tggcgcgac gccgcttac aacaagtcc gtgtggcgc ggcgtcgaa gccaaactc cacctccgt cgcgctaac ccttcacta ttcgcttcg ctggtgaaa cgcggtatc aaacgtgtt caggtcctg tccctacgt aaatccctc cgggacgtc atccagggc atccctaac ttggagtct ttgaacctc cgtggttgt tacaacgtg ggggacgtg ggcatatcc cacgcattt gtggcagac tcacccacc ctcaccgaa ctggacctc tccctctgc aagcaagtc accgacacg tccctcaca cgcatcgcc caacacttg aagaacttg gaggtgctg gaactgggc ggttgctcc aacgtcacc aactccggc ctgatgctc atcgcctgg ggcctcaag aagctcaaa agactgaat ttacgctcg tgctggcac gtgggggac caaggaatc caacacttg gcttcgggg aatccatcg ctcgagcac ttggggctc caagactgt cagaaactc tccgacgag gctctcaaa cacgccacc ggcttgact tccctcatc tcaatcaat ctgagtttt tgtgttagt ataacggac agcgggtta aaacaccta gccaaaatg acgaattta cgcgagttg aatttgcgt tcgtgtgat aatatttcc gacacggga atggcgttc cttgcagaa ggcgggtcg agaatttcg tctttggac gtatcattt tgtgacaaa atcggtgac caagcgcta gtgcacatt tcacaagga ctgttcaat ttgcgaaat ttgttaatg agtgcgtgt caactctcg gatgaaggt ctggcgaaa atcgcgaat tcgctccat gacctggag acgctcaac atcggacag tgcagtcgt gtgacggat aagggctta acaaccatt gctgagtcg ctcctgaga ctaaagtgc atcgatttg tacggatgc accaggata acgacggta ggacttgaa cgaattatg aaattgccg cagttgagt gtcctcaat ttggggctg tggcatgtt aggtga
- >TC009492 RA
ggtcacgtg gtgcgcact cggaccaat ggcagcact cgcaactcg tttcgtctg ttctccagt ttggtcgcc aacagtttg aaatgagtc gttgtagag gtgagaagg cgcccgtgc tccgagtcg tggtgcgca cgtagtggt tccgactat gatggagga gatgttcac tgagttgcc cgtcccctt gctgtccac agcggccat catccgcca ccacaccag ataccagcc ctaccaaag gctgcacca gccccagca cttccacac gcccgtcca ggagctcca cgcgctgca acaaccaga ccatggcac cacgcacat ctcctgtct ctatccaga gatcttggc catcatctt cagctacct ggaggtgcg cgacaaggg ccgcgtggc gcaggtttg cactgcgtg gcgcgacgc cgcttacaa caagtccgt gtggcgcgg cgtcgaagc caaactcca cctccgtcg cgctaaccc ttcactatt cgcttcgct ggtgaaacg cggtatcaa acgtgttca ggtcctgtc cctacgtaa atccctccg ggacgtcat ccagggcat ccctaactt ggagtcttt gaacctccg tggttgtta caacgtggg ggacgtggg catatccca cgcatttgt ggcagactc acccaccct caccgaact ggacctctc cctctgcaa gcaagtcac cgacacgtc cctcacacg catcgccca acacttgaa gaacttgga ggtgctgga actgggcgg ttgctccaa cgtcaccaa ctccggcct gatgctcat cgcctgggg cctcaagaa gctcaaaag actgaattt acgctcgtg ctggcacgt gggggacca aggaatcca acacttggc ttcggggaa tccatcgct cgagcactt ggggctcca agactgtca gaaactctc cgacgaggc tctcaaaca cgccaccgg cttgacttc cctcatctc aatcaatct gagtttttg tgttagtat aacggacag cgggttaaa acacctagc caaaatgac gaatttacg cgagttgaa tttgcgttc gtgtgataa tatttccga cacgggaat ggcgttcct tgcagaagg cgggtcgag aatttcgtc tttggacgt atcattttg tgacaaaat cggtgacca agcgctagt gcacatttc acaaggact gttcaattt gcgaaattt gttaatgag tgcgtgtca actctcgga tgaaggtct ggcgaaaat cgcgaattc gctccatga cctggagac gctcaacat cggacagtg cagtcgtgt gacggataa gggcttaac aaccattgc tgagtcgct cctgagact aaagtgcat cgatttgta cggatgcac caggataac gacggtagg acttgaacg aattatgaa attgccgca gttgagtgt cctcaattt ggggctgtg gcatgttag gtgaaacgt atttgttga aatttgcgc cctctgaat gaaacgagt cgagatgac caaaaatgc attcattcc caaatctcg accggttca agacggtgg cggttttat gctgtgata gattttaaa cgaatgacg taaagttcg actaaagtg aaattaaac gtaagcatc gtaaacaat gagaactga ttttctatg gtggtgccg ccaaaatga agcacatgc tagttacag ggaataatt cacatgaat tcgaccgaa caacttttt tgatactag tttattaaa acgttggtc tgtttactc tttgttatt tttctactt aaatgttag cacttctaa gtcgctatc aactttttt tttaatgaa aagctatgt ttttcacta cgtttttgg attatttga gttatttta agggaattt ttatcagct gtccccata tctaaattt aatcgtttt cgagatatt taagaattt ttggaaatg tttgaatta caccgttca cttagatgt tcacattca tagtaattt tatttaaag gaggatttt attgcagac gagtgtaat taaacgaaa aattccaaa tagtgaata tttgcttca ttttgtgca caccaccca agatttgac actgctaca agccttgga atttttttc ataccttca ctagcacgt agcaccaca aatttgcaa tattataca tcgaattgt gattagttt gtttcgaaa aatgtgata gcggttaaa caatcattt tcgaaaacg ttaagtttg aatttcgcc tctttgtta gcatcaggt ttttgttca atttttgct tgttccgtg ttttttttt tgtggtgca gagacaatt tttcaaact gtaaaaatg tacagtgat cattatagt atttgtaaa taaacgtaa agttatcaa tatttgtta ctattacgt tatgttttt ataaattaa acaaattta aacttaata aagttttta tcaacaa
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
