Status
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Gene information
General information
TC007066 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007419.2: 10134755..10136339
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC007066
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes


    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
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    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
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    Name
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    Email
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_04266

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)

    adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 50
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC007066 RA
      METPKPKLE KYQLVAPDG GWGYVVAAA LTLMISVTI 
      IPMSSFGLI FGRFLASIG DETTGTTLA NGIFNTCFN 
      ITGLAANNL LQKYTYRTV ALAGALVFF IGSFATIFV 
      TTLPQMVLS FGVIQGLGM GLMFPAFFT ALNSYFDRK 
      LNIVNAVAQ AFMVVAGMS FPFVGQFFM EKFGFRGSV 
      ALISGLSVH CILAAFTLQ PVEWHLIKQ KITLEQEEL 
      LGLDDGKYV MPKPRASII SLGDRAVSV TTLNKPQAK 
      KSNFLQNLA KSMDLAMFK DPVYVNISL GLSLGFTAD 
      VAFISIIPL VLINAGFNS HETAFFMSI FFAADLCAR 
      IFLTVISAA TKIKNRYYF LTGSALLVI FRTAFVARN 
      DYYWKLATV ASVGFLRAF IQTPLPVVI SEQYSENFS 
      TAFSLYMVV CGVVCFIFG PLMSFVKKV TQSDVMVVH 
      LLSLAYLTC VATWTIELI IKRLRKKQD RTQGAKK
    CDS sequence
    • >TC007066 RA
      atggaaact ccgaaacca aaactcgaa aagtaccaa 
      cttgtagcc cccgacggg ggctggggc tacgtcgtg 
      gccgccgcc ctcaccctc atgatcagt gtgacaatc 
      atcccgatg tcgtcgttc gggctgatt ttcggccgg 
      tttctggcc tcgatcggc gacgaaacc acgggcacc 
      accctcgcc aacggcatc ttcaacacc tgcttcaac 
      atcacgggc ctggccgcc aacaacctc ctccaaaaa 
      tacacctac cgaacggtg gctttggcc ggagccttg 
      gtcttcttc atcgggagc ttcgccacg attttcgtc 
      acaaccctc ccgcaaatg gtgctctcc ttcggcgtg 
      atccaaggc ctgggcatg gggctgatg ttccctgcg 
      ttcttcacg gccttaaac tcgtatttc gaccggaaa 
      ttgaacatc gtgaacgcc gtggcccag gcctttatg 
      gtcgtggct gggatgagc ttcccgttt gttgggcaa 
      ttttttatg gagaaattc gggtttcgg gggtccgtt 
      gccttgatt tccggactg agcgtccac tgcatactg 
      gctgctttt accctgcaa ccagtcgag tggcatttg 
      atcaaacag aaaattact ctcgaacag gaggaactc 
      ctagggctt gatgacgga aaatatgtg atgcccaaa 
      ccaagagcc tctatcata agtctcggg gatagagcc 
      gtttccgta accacactc aacaaaccc caagcgaaa 
      aagagcaac tttttgcag aatttggcc aaatcgatg 
      gacttagca atgttcaaa gacccggtt tatgtgaac 
      atttcttta ggattatcg ctgggattc accgctgat 
      gtggccttc atctcaata atccccctc gtgttaatc 
      aatgcgggt ttcaattcg cacgaaacc gcctttttc 
      atgtcgatt tttttcgcc gctgattta tgcgcccga 
      attttccta actgtgata agtgctgct acgaaaatc 
      aaaaatcgg tactacttt ctgaccgga tcggccctt 
      ctagtgatc ttccgaacg gcctttgtt gcgcgcaat 
      gattactac tggaagttg gcaacagtg gcctctgtt 
      ggctttttg agggccttc atacaaaca cctctccca 
      gttgtgata tcagagcag tattcggag aatttctcg 
      acggccttt tcgctctac atggttgtg tgtggggtc 
      gtttgtttc atattcgga cccttgatg agttttgtg 
      aaaaaagtg acacagagc gacgtcatg gtggtccat 
      ttattgagc ctcgcttat ttgacttgt gtcgcaact 
      tggaccatc gaactgata attaaaaga ctgaggaaa 
      aagcaagac cggacacaa ggagccaaa aaataa
    mRNA sequence
    • >TC007066 RA
      taagactta ataaataat gataacgcg tacgtttgg 
      aacaaactc aattgttac actaatctc ggcatggaa 
      actccgaaa ccaaaactc gaaaagtac caacttgta 
      gcccccgac gggggctgg ggctacgtc gtggccgcc 
      gccctcacc ctcatgatc agtgtgaca atcatcccg 
      atgtcgtcg ttcgggctg attttcggc cggtttctg 
      gcctcgatc ggcgacgaa accacgggc accaccctc 
      gccaacggc atcttcaac acctgcttc aacatcacg 
      ggcctggcc gccaacaac ctcctccaa aaatacacc 
      taccgaacg gtggctttg gccggagcc ttggtcttc 
      ttcatcggg agcttcgcc acgattttc gtcacaacc 
      ctcccgcaa atggtgctc tccttcggc gtgatccaa 
      ggcctgggc atggggctg atgttccct gcgttcttc 
      acggcctta aactcgtat ttcgaccgg aaattgaac 
      atcgtgaac gccgtggcc caggccttt atggtcgtg 
      gctgggatg agcttcccg tttgttggg caatttttt 
      atggagaaa ttcgggttt cgggggtcc gttgccttg 
      atttccgga ctgagcgtc cactgcata ctggctgct 
      tttaccctg caaccagtc gagtggcat ttgatcaaa 
      cagaaaatt actctcgaa caggaggaa ctcctaggg 
      cttgatgac ggaaaatat gtgatgccc aaaccaaga 
      gcctctatc ataagtctc ggggataga gccgtttcc 
      gtaaccaca ctcaacaaa ccccaagcg aaaaagagc 
      aactttttg cagaatttg gccaaatcg atggactta 
      gcaatgttc aaagacccg gtttatgtg aacatttct 
      ttaggatta tcgctggga ttcaccgct gatgtggcc 
      ttcatctca ataatcccc ctcgtgtta atcaatgcg 
      ggtttcaat tcgcacgaa accgccttt ttcatgtcg 
      atttttttc gccgctgat ttatgcgcc cgaattttc 
      ctaactgtg ataagtgct gctacgaaa atcaaaaat 
      cggtactac tttctgacc ggatcggcc cttctagtg 
      atcttccga acggccttt gttgcgcgc aatgattac 
      tactggaag ttggcaaca gtggcctct gttggcttt 
      ttgagggcc ttcatacaa acacctctc ccagttgtg 
      atatcagag cagtattcg gagaatttc tcgacggcc 
      ttttcgctc tacatggtt gtgtgtggg gtcgtttgt 
      ttcatattc ggacccttg atgagtttt gtgaaaaaa 
      gtgacacag agcgacgtc atggtggtc catttattg 
      agcctcgct tatttgact tgtgtcgca acttggacc 
      atcgaactg ataattaaa agactgagg aaaaagcaa 
      gaccggaca caaggagcc aaaaaataa gcctccagt 
      aaataggat tcttttata
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY