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Gene information
General information
TC006795 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007423.3: 14356924..14358147
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC006795
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes


    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
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    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
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    Name
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    Email
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    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_04214

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 70.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 4 (3 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 2 (9 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 20.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 20.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 2 (11 dpi)
    Days post injection


    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC006795 RA
      MLLTKLIIS LSVYYFTRV SCLCEKSFI VSCETLTDV 
      AFNKSKKTW TELLVQPNK CVTKVVPKY TLTKDLLFG 
      LYNLDVLII SNELIEIER NAFTYCKSL QNLILYDNK 
      VPVIRKSTF VGFWIMLKV SLENNHIER IEKGAFVAT 
      NINFLDLSR NKLVVIPAD IFVKNSRLE KLSVAHNKL 
      VFIHIQTLP KNLKQLYLD HNKLDALPD GLHLLEELK 
      ELTISHNYL SSLPHFEGL RLLEKLDVS FNNINQVGQ 
      FHFDNLTNL KYLDLSGNS LKKFNIPVN FKGEGLQQK 
      LFLAFNRLR YLNFDGVNS ELVLTLAGN PWNCKCLET 
      MEKNILLSG ASVRTVCDL KFGGLGQNP ICVNDGDCS 
      ESEVPEKLF QKFRSAFQS MDCELFTDL DIFVN
    CDS sequence
    • >TC006795 RA
      atgcttctc acaaaatta attatttcg ctgagtgtt 
      tactacttt acaagagtg agctgtttg tgtgaaaaa 
      tcgttcata gtatcgtgt gaaacgcta acggacgtt 
      gcatttaac aaatcgaaa aaaacctgg accgagtta 
      cttgtgcaa cccaacaaa tgtgtcacc aaggtagtg 
      ccaaaatac actctaacg aaagatcta ctttttggt 
      ctgtacaat ttagacgtc ctgatcatc agtaacgaa 
      ttaatcgaa atagaacgc aacgctttt acttattgc 
      aaaagtctc caaaacctc atcctttac gacaacaag 
      gttccagtg attcgaaaa tcaacattt gtcggattc 
      tggataatg ctaaaagtg agtttggag aataatcac 
      attgagcga atagaaaaa ggggctttt gtggcaact 
      aacataaat ttccttgat ttgtctcgt aataaactg 
      gtagtgatc ccagctgat attttcgtg aaaaacagc 
      cgacttgag aagttaagt gtggcccac aacaaacta 
      gtatttatc cacatccag actttacca aaaaatttg 
      aaacaactt tacttggat cacaataaa cttgacgca 
      ctaccggat gggctccac cttttggaa gaactcaaa 
      gagctcaca attagtcac aattatcta agtagttta 
      ccacatttt gaaggactc agacttttg gaaaagttg 
      gacgtttcg ttcaacaac atcaaccaa gtcggccaa 
      ttccacttt gataattta acaaatctg aaatacttg 
      gatttgagt ggaaatagt ttgaaaaaa ttcaatatt 
      ccggtcaat ttcaagggt gaaggactt caacaaaaa 
      ctttttttg gcttttaat cgtttaaga tatttgaat 
      tttgatggg gttaacagt gaacttgtc ctgacactt 
      gctggcaat ccgtggaat tgtaagtgt ttagaaacg 
      atggaaaaa aatattctt ctgtctgga gcttccgta 
      cgaacagtt tgtgacttg aaattcggt ggtttgggg 
      caaaacccg atttgtgtc aatgatggt gactgttct 
      gaaagtgaa gtgccagaa aaactgttt cagaagttc 
      aggagtgcc tttcagagt atggactgt gagcttttc 
      acagacttg gatattttt gtgaactag
    mRNA sequence
    • >TC006795 RA
      atctcgcaa aaatgcttc tcacaaaat taattattt 
      cgctgagtg tttactact ttacaagag tgagctgtt 
      tgtgtgaaa aatcgttca tagtatcgt gtgaaacgc 
      taacggacg ttgcattta acaaatcga aaaaaacct 
      ggaccgagt tacttgtgc aacccaaca aatgtgtca 
      ccaaggtag tgccaaaat acactctaa cgaaagatc 
      tactttttg gtctgtaca atttagacg tcctgatca 
      tcagtaacg aattaatcg aaatagaac gcaacgctt 
      ttacttatt gcaaaagtc tccaaaacc tcatccttt 
      acgacaaca aggttccag tgattcgaa aatcaacat 
      ttgtcggat tctggataa tgctaaaag tgagtttgg 
      agaataatc acattgagc gaatagaaa aaggggctt 
      ttgtggcaa ctaacataa atttccttg atttgtctc 
      gtaataaac tggtagtga tcccagctg atattttcg 
      tgaaaaaca gccgacttg agaagttaa gtgtggccc 
      acaacaaac tagtattta tccacatcc agactttac 
      caaaaaatt tgaaacaac tttacttgg atcacaata 
      aacttgacg cactaccgg atgggctcc accttttgg 
      aagaactca aagagctca caattagtc acaattatc 
      taagtagtt taccacatt ttgaaggac tcagacttt 
      tggaaaagt tggacgttt cgttcaaca acatcaacc 
      aagtcggcc aattccact ttgataatt taacaaatc 
      tgaaatact tggatttga gtggaaata gtttgaaaa 
      aattcaata ttccggtca atttcaagg gtgaaggac 
      ttcaacaaa aactttttt tggctttta atcgtttaa 
      gatatttga attttgatg gggttaaca gtgaacttg 
      tcctgacac ttgctggca atccgtgga attgtaagt 
      gtttagaaa cgatggaaa aaaatattc ttctgtctg 
      gagcttccg tacgaacag tttgtgact tgaaattcg 
      gtggtttgg ggcaaaacc cgatttgtg tcaatgatg 
      gtgactgtt ctgaaagtg aagtgccag aaaaactgt 
      ttcagaagt tcaggagtg cctttcaga gtatggact 
      gtgagcttt tcacagact tggatattt ttgtgaact 
      agtttaaaa tattgttaa taaacgcga gaaatgaat
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY