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Gene information
General information
TC006172 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007423.3: 4236343..4237921
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC006172
    iBeetle screen iB_04080

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)

    adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 50
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 10.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 20.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection


    eclosion not fulfilled (died as pupa) - Number of animals showing the phenotype: 1 (16 dpi)
    Days post injection


    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC006172 RA
      MAASLARRV SRFFKRMGL VGYSKRRNI FGIHPLVIS 
      TTYIILALA LAALTRKVV NLVLNDSLF KRMILEFIA 
      TLELCAACF ELIIVADNW GIWAYAFYL FVLTIWWSS 
      SWDTATACP YSPIEEILE GSQDVSNAA LLIFSQILG 
      ALVTFRYVQ ILWAMELVE THRSKAFED CMADLQVHM 
      LVGAVVEAT GTCLCRLAS KFLSDTQVK FANVLDAFF 
      ATMMVVAAF NFSGGYYNP ALATSLKLG CEGNTFVEH 
      LVVYWIGAT IGSVLSVLI FKSAPVREY MRSVKAKVD
    CDS sequence
    • >TC006172 RA
      atggcggct agtttagcc cgaagggtg tcccgattt 
      tttaaacgg atgggtctg gtgggctat agcaaacgt 
      cggaacata ttcggaatc catccttta gttatctca 
      accacttac ataatccta gcactcgct ttagcggcc 
      ctaactcga aaagtggtc aacttggtg ctaaacgac 
      agccttttc aaacgcatg attttggaa ttcatcgca 
      actttggaa ttgtgcgcc gcttgtttc gaattaatt 
      atcgttgcg gacaattgg ggcatttgg gcctacgct 
      ttttacctc ttcgtttta acgatatgg tggagttcg 
      agttgggac acggcaacc gcgtgtccc tacagcccc 
      atcgaagaa atcctggaa gggtctcag gatgtgagc 
      aatgctgcg ttgttgatt ttctcgcag attttgggc 
      gctttggtc acgtttcgt tacgtgcaa attttatgg 
      gcgatggaa ttggttgaa acccatcgc agtaaagcg 
      ttcgaggat tgcatggcc gatttgcaa gtgcacatg 
      cttgtgggg gctgttgtt gaagcgaca gggacgtgt 
      ctttgccga ttggcgtcg aagtttttg agcgatact 
      caagtcaaa tttgcgaac gtgttggat gcgtttttt 
      gccaccatg atggtggtc gcagctttc aatttctct 
      ggaggatat tacaatcca gcgttggcg acttcgttg 
      aaacttggt tgtgagggc aatactttc gtcgaacat 
      ttagttgtg tactggatt ggggcgact atagggtcc 
      gtattgtca gttttgatt tttaagtcg gcgccggtt 
      cgggaatat atgagaagt gtgaaggct aaagtggat 
      taa
    mRNA sequence
    • >TC006172 RA
      acaattttt atgtcctct tgaacgttt ttttggtgg 
      catctgtgt gcgtatggt ttaaaatta gaccacaag 
      cctagaaaa tactaatta taacaccgc ttgcctttg 
      attatttta ttacatagt gaacgaaat cgcgcgacc 
      tttaacaat gcccaagtg aataaatta ataattaaa 
      gtgaaaaaa ataaaacca tggcggcta gtttagccc 
      gaagggtgt cccgatttt ttaaacgga tgggtctgg 
      tgggctata gcaaacgtc ggaacatat tcggaatcc 
      atcctttag ttatctcaa ccacttaca taatcctag 
      cactcgctt tagcggccc taactcgaa aagtggtca 
      acttggtgc taaacgaca gccttttca aacgcatga 
      ttttggaat tcatcgcaa ctttggaat tgtgcgccg 
      cttgtttcg aattaatta tcgttgcgg acaattggg 
      gcatttggg cctacgctt tttacctct tcgttttaa 
      cgatatggt ggagttcga gttgggaca cggcaaccg 
      cgtgtccct acagcccca tcgaagaaa tcctggaag 
      ggtctcagg atgtgagca atgctgcgt tgttgattt 
      tctcgcaga ttttgggcg ctttggtca cgtttcgtt 
      acgtgcaaa ttttatggg cgatggaat tggttgaaa 
      cccatcgca gtaaagcgt tcgaggatt gcatggccg 
      atttgcaag tgcacatgc ttgtggggg ctgttgttg 
      aagcgacag ggacgtgtc tttgccgat tggcgtcga 
      agtttttga gcgatactc aagtcaaat ttgcgaacg 
      tgttggatg cgttttttg ccaccatga tggtggtcg 
      cagctttca atttctctg gaggatatt acaatccag 
      cgttggcga cttcgttga aacttggtt gtgagggca 
      atactttcg tcgaacatt tagttgtgt actggattg 
      gggcgacta tagggtccg tattgtcag ttttgattt 
      ttaagtcgg cgccggttc gggaatata tgagaagtg 
      tgaaggcta aagtggatt aaacttgtt ttttttttg 
      acctgatct agtcataat tgtaataat taaataaat 
      taattacga aatg
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY