General information | |||
TC005842 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007423.3: 6758319..6760210 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs | TC005842 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_04020 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)
adult lethality - Number of animals showing the phenotype: 1 (9 dpi)affected eggs/embryos/larvae total percentage of affected eggs/embryos/larvae on slide - Penetrance (percentage of animals/eggs on slide): less than 30%
remarks: muscle pattern potentially obscured by segmentation defect,
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 20.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 20.0% (includes death as larva, prepupa, pupa, adult)
- >TC005842 RA
MPPVVESRP TWSSNFRLY LAMFSYSTG ITIPKFASP WLLKTNVGI LLLIPVQLL VMFLTTIPC MFMELALGQ YSNRAVIRV WDLCPLLRG IGLCSFLTF LLYQSYYNF LCTCSLCFT FLSFTSEPQ WRSCNRSWN KINCFTLRD NYTKRLECS QRYGREKCD KMQWQSSVE QFYFNRVLN TDETSGYVG APQPELLVY GLVTIILIF FANYGGPKT TEKFLLVLA TVPTVQMVV LFFAPLSDQ NGFVTLNYL FTQLDVKNL SNFKTWTRI INLSLSSPG LGFGAFIAF GTQSTFRTP LHFKAIIIS VTSVLFTVL YSIIVQNFL ISLCIQSQM LFDDFFKLE QELEMPEAV FFLEHSSRF WITMWLSNC YMTGLRSLI VMMCLNTEV VYNSLPKAR KRHTLCVLT FSLIIYTGT IFLSTRIGY SVFKTIESV LNDFCVPFL NTLQLVGVV YFYGITKFR DDVHFMLGI RSSVYWNTL YVLNPLLLG IVLAYNLHD FFTGGSFNF HSLGIFRIS LIWFSLVVV TLYAFFYII VSFFGHHFK VCKSSPEWG PRHGSLFVS RKMFKAYNV AKEYLYRQE RFSQQ
- >TC005842 RA
atgcctccg gtggtggaa tcccgccca acgtggagc tccaatttc cggctctac ctggcaatg ttcagctac agtaccggg ataacgatc ccgaagttc gctagtcct tggctcctc aagaccaat gtcgggatc ctcctcctg atccccgtc cagctcctg gtcatgttc ctgacgacg atcccttgc atgttcatg gagctagcc ctggggcag tactccaac cgggcggtg atacgagtg tgggacttg tgcccgtta ctgcgagga atcggctta tgcagtttc ctcacgttt ctgctctac caatcgtat tacaatttc ctctgtaca tgtagtctt tgtttcacg tttttgtca ttcacgagc gaaccacaa tggagatct tgtaacagg agttggaat aagataaat tgcttcact ttgcgagac aattacacg aagcgactc gaatgcagc cagagatac ggcagggaa aagtgcgac aagatgcag tggcagtcg agcgtggag cagttttac ttcaaccgg gtgctgaac acggatgag acttccggt tatgtgggg gccccccag cctgaacta ctggtctat ggattggtc acaattatt ttgattttt tttgcgaac tatggtggc cccaaaacc accgaaaaa ttccttctg gtgttggca acggtgccc acggttcaa atggttgtc ttgtttttt gcccccttg tcggaccag aacggcttt gtgaccctt aattacttg ttcacccaa ctggatgtg aaaaatttg tccaatttt aagacctgg actaggatt ataaacttg tctctgagt agtccaggc ctggggttt ggtgccttc attgctttc ggcacgcag agcactttc aggacccct ctgcacttc aaggcgatc ataataagc gtcacttcg gttttattc acagtcttg tacagtatc atagtccag aacttttta atttcgttg tgcatccaa agccagatg ttgtttgac gattttttt aaactggaa caggagctg gagatgcct gaggccgtg tttttcctg gaacacagt tccaggttt tggataacc atgtggtta tccaattgt tacatgacc ggtctccga agtttgatt gtgatgatg tgcctgaac accgaagtg gtttataac tcgttacca aaggccaga aaacgacac acactctgt gttctaacg ttctctctt ataatctac accgggacg attttcctg tcaacgaga attggttac tccgtgttt aaaaccatc gaaagtgtg ttaaacgac ttttgtgtt ccgttcctc aacacttta caactcgtc ggagttgtg tatttttac ggtattact aaatttaga gacgatgtc cactttatg ttagggata cggtcgtca gtgtactgg aacacgctc tacgtcctt aatcccctt cttctgggg attgtgttg gcctacaac ttgcacgat ttcttcact ggggggagt ttcaatttt cacagtctt ggtattttt aggataagt cttatttgg tttagtctt gttgttgtc acgttgtat gcttttttc tacattatt gttagtttc tttgggcac cattttaaa gtttgtaag tcgtcacct gagtggggc cctcgacac ggctccctg tttgtgagc cgaaaaatg ttcaaggcc tataacgtg gccaaggag tatttgtat cgtcaagaa cggttcagt cagcaataa
- >TC005842 RA
aaagttgac gcgcgcgtt tcaaatcca tgcctccgg tggtggaat cccgcccaa cgtggagct ccaatttcc ggctctacc tggcaatgt tcagctaca gtaccggga taacgatcc cgaagttcg ctagtcctt ggctcctca agaccaatg tcgggatcc tcctcctga tccccgtcc agctcctgg tcatgttcc tgacgacga tcccttgca tgttcatgg agctagccc tggggcagt actccaacc gggcggtga tacgagtgt gggacttgt gcccgttac tgcgaggaa tcggcttat gcagtttcc tcacgtttc tgctctacc aatcgtatt acaatttcc tctgtacat gtagtcttt gtttcacgt ttttgtcat tcacgagcg aaccacaat ggagatctt gtaacagga gttggaata agataaatt gcttcactt tgcgagaca attacacga agcgactcg aatgcagcc agagatacg gcagggaaa agtgcgaca agatgcagt ggcagtcga gcgtggagc agttttact tcaaccggg tgctgaaca cggatgaga cttccggtt atgtggggg ccccccagc ctgaactac tggtctatg gattggtca caattattt tgatttttt ttgcgaact atggtggcc ccaaaacca ccgaaaaat tccttctgg tgttggcaa cggtgccca cggttcaaa tggttgtct tgttttttg cccccttgt cggaccaga acggctttg tgaccctta attacttgt tcacccaac tggatgtga aaaatttgt ccaatttta agacctgga ctaggatta taaacttgt ctctgagta gtccaggcc tggggtttg gtgccttca ttgctttcg gcacgcaga gcactttca ggacccctc tgcacttca aggcgatca taataagcg tcacttcgg ttttattca cagtcttgt acagtatca tagtccaga actttttaa tttcgttgt gcatccaaa gccagatgt tgtttgacg attttttta aactggaac aggagctgg agatgcctg aggccgtgt ttttcctgg aacacagtt ccaggtttt ggataacca tgtggttat ccaattgtt acatgaccg gtctccgaa gtttgattg tgatgatgt gcctgaaca ccgaagtgg tttataact cgttaccaa aggccagaa aacgacaca cactctgtg ttctaacgt tctctctta taatctaca ccgggacga ttttcctgt caacgagaa ttggttact ccgtgttta aaaccatcg aaagtgtgt taaacgact tttgtgttc cgttcctca acactttac aactcgtcg gagttgtgt atttttacg gtattacta aatttagag acgatgtcc actttatgt tagggatac ggtcgtcag tgtactgga acacgctct acgtcctta atccccttc ttctgggga ttgtgttgg cctacaact tgcacgatt tcttcactg gggggagtt tcaattttc acagtcttg gtattttta ggataagtc ttatttggt ttagtcttg ttgttgtca cgttgtatg cttttttct acattattg ttagtttct ttgggcacc attttaaag tttgtaagt cgtcacctg agtggggcc ctcgacacg gctccctgt ttgtgagcc gaaaaatgt tcaaggcct ataacgtgg ccaaggagt atttgtatc gtcaagaac ggttcagtc agcaataac ttgtgcaat aaaatattt caaataac
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
