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Gene information
General information
TC003023 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007418.3: 4256231..4257422
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC003023
    iBeetle screen iB_03485

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 0.0% (includes death as pupa, adult)

    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 50
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 30.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 40.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 2 (11 dpi)
    Days post injection


    pupal molt not fulfilled (died with pupal and larval features) - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 1 (19 dpi)
    Days post injection


    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC003023 RA
      MDQLEDVDE VLREIERKY SSSSSIECP 
      KSDLEEQLQ LLSQDFETL GLPPIDLAK 
      SGTELLEQV VNNSLLLVQ LHRKTISQM 
      SDLGICNRS KEIKNNDLE KDIVHLKLK 
      LRAVEGQNL KLERQLTKV NSECDALSK 
      KVSLHNTET DKLKQYHKA KLNELVHHV 
      NSLKNENHH LREMCGKDI DKYFSKEDR 
      FLKILKKHK QTEEVYKSA LQKLEDNNT 
      EIMNEILNL KEELALSYL KKD
    CDS sequence
    • >TC003023 RA
      atggatcag ttggaagac gttgacgaa gttttgcga 
      gaaattgag aggaagtat tcgagttcg tccagtatt 
      gagtgcccc aagagtgac ttggaggag cagctgcag 
      ctcttgtca caggatttt gagacattg ggtcttcca 
      ccaatcgac ttggcaaag tctggcaca gaattgttg 
      gaacaagtt gtaaataat tcgcttttg ttggttcaa 
      ttacacaga aaaacgata tcgcagatg tccgatttg 
      ggtatttgt aatcgctca aaagagata aaaaataac 
      gacttggag aaagacatc gttcatttg aaacttaaa 
      cttagggct gttgagggg caaaatcta aagttagaa 
      agacaatta actaaagta aatagcgaa tgtgacgcg 
      ttgagtaag aaagtatca ctgcataac acagagact 
      gataagtta aagcaatat cacaaagca aagctgaac 
      gaattggtt catcatgta aatagtttg aaaaatgaa 
      aaccaccat ttgcgagaa atgtgtggt aaagatatt 
      gacaaatac tttagcaag gaagataga tttttgaaa 
      atattgaaa aagcacaaa cagactgaa gaagtgtac 
      aaaagtgcc ttacagaaa ctcgaggat aacaacacg 
      gagattatg aatgagatt ttaaatctg aaggaggaa 
      ttagcttta tcatatctg aaaaaagat tag
    mRNA sequence
    • >TC003023 RA
      ggtggggtt tttaattta gttttggcg gtttttggc 
      taaatgcca catagaata ttcgtgtgt gtgtgtctc 
      gttttttcg ttttcatga cttttgggc acataagtg 
      gtgcaagcc ccaattgca gtgaatttg tgtgtcagc 
      ggtagtgct gtttgtggt tatgttgtc ggcgtcatc 
      cgtcagaat ttgaatttg aaaaaagtc agaagtttg 
      cgagttaaa atagattct attgatcta acaataatg 
      gatcagttg gaagacgtt gacgaagtt ttgcgagaa 
      attgagagg aagtattcg agttcgtcc agtattgag 
      tgccccaag agtgacttg gaggagcag ctgcagctc 
      ttgtcacag gattttgag acattgggt cttccacca 
      atcgacttg gcaaagtct ggcacagaa ttgttggaa 
      caagttgta aataattcg cttttgttg gttcaatta 
      cacagaaaa acgatatcg cagatgtcc gatttgggt 
      atttgtaat cgctcaaaa gagataaaa aataacgac 
      ttggagaaa gacatcgtt catttgaaa cttaaactt 
      agggctgtt gaggggcaa aatctaaag ttagaaaga 
      caattaact aaagtaaat agcgaatgt gacgcgttg 
      agtaagaaa gtatcactg cataacaca gagactgat 
      aagttaaag caatatcac aaagcaaag ctgaacgaa 
      ttggttcat catgtaaat agtttgaaa aatgaaaac 
      caccatttg cgagaaatg tgtggtaaa gatattgac 
      aaatacttt agcaaggaa gatagattt ttgaaaata 
      ttgaaaaag cacaaacag actgaagaa gtgtacaaa 
      agtgcctta cagaaactc gaggataac aacacggag 
      attatgaat gagatttta aatctgaag gaggaatta 
      gctttatca tatctgaaa aaagattag aataatttt 
      tacaacttt gattgtttt aaatttaag acttatgta 
      cttattatg aattatatt tttaataaa aactgcacg 
      taaaa
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY