Status
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Gene information
General information
TC000750 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007417.3: 6235144..6238314
Sequence information
Transcripts / Proteins (2) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC000750
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes


    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
    {{ goGene }}
    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
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    Email
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    Publish name
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_03073

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 1 (3 dpi)
    Days post injection


    Fertility
    ovary without detectable defects - Number of animals showing the phenotype: 4
    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC000750 RA
      MSLEDPLYH ITPVQQAAA SCTGAVLTS LLVTPLDVV 
      KIRLQAQHR LSQNVSNKC FLYCNGLMD HFCGCTPNN 
      GQKHWFQRP GHFNGTIDA FIKITKNEG IYSLWSGLG 
      PTLVLALPT TILYFVTYE QLRLRLKNL YNRNNVEGQ 
      ERKQPYWIP LISGATARI FAVSVVSPL ELIRTKMQS 
      RKISYAEIN ESLKLLIKQ DGIKGLWKG VFPTLGRDV 
      PFSAIYWMN YETIKGFFG SDTPTFGVS FFAGAVSGG 
      IAAFATVPF DVVKTHQQI EIGEKTLYT DKPQRTKRT 
      AQIIREIYR HSGIKGLYA GLVPRLVKV APACAIMIS 
      SFEYGKVFF YRYNEFMYN HGASLQEVT DFYAEEYFP 
      PEHN
    • >TC000750 RB
      MSLEDPLYH ITPVQQAAA SCTGAVLTS LLVTPLDVV 
      KIRLQAQHR LSQNVSNKC FLYCNGLMD HFCGCTPNN 
      GQKHWFQRP GHFNGTIDA FIKITKNEG IYSLWSGLG 
      PTLVLALPT TILYFVTYE QLRLRLKNL YNRNNVEGQ 
      ERKQPYWIP LISGATARI FAVSVVSPL ELIRTKMQS 
      RKISYAEIN ESLKLLIKQ DGIKGLWKG VFPTLGRDV 
      PFSAIYWMN YETIKGFFG SDTPTFGVS FFAGAVSGG 
      IAAFATVPF DVVKTHQQI EIGEKTLYT DKPQRTKRT 
      AQIIREIYR HSGIKGLYA GLVPRLVKV APACAIMIS 
      SFEYGKVFF YRLANPDSD IFNSSKENL QSNK
    CDS sequence
    • >TC000750 RA
      atgtcatta gaggatccg ctatatcac ataactcca 
      gtgcaacaa gcggccgct tcatgtacg ggggctgtt 
      ctaacctca cttttagtc actccatta gacgtagtc 
      aaaattaga ttacaagct cagcatcgc ttatctcaa 
      aatgtgtcc aataaatgt tttttatac tgtaatggg 
      cttatggac catttttgt ggttgtact ccaaacaat 
      gggcagaag cattggttt caaagacct gggcacttt 
      aacggaact atagacgct tttattaaa attacgaaa 
      aatgaagga atttattca ttgtggagc ggtttagga 
      cctactcta gttctagca cttccgacc acaattttg 
      tattttgtg acttatgaa cagttaaga ttaagattg 
      aagaatttg tacaataga aacaacgtg gagggacaa 
      gagaggaaa cagccttat tggattcca ttaatctca 
      ggtgcaact gccagaata tttgctgtt tctgttgta 
      agtccttta gaattgatt agaactaaa atgcaatcg 
      cggaaaata tcgtacgca gaaataaac gaatcttta 
      aaattgttg attaagcaa gacgggatc aagggatta 
      tggaagggt gtttttcca actttggga agggatgtt 
      cccttctct gccatttac tggatgaat tacgagacc 
      atcaaaggt ttttttggg tcagacact ccaactttt 
      ggcgttagt tttttcgct ggggctgtg tcaggaggg 
      attgctgct tttgccaca gttccgttt gatgtcgtt 
      aaaacccac caacagatc gaaattggt gaaaaaact 
      ctttatacc gataaacca caaagaaca aaacgtaca 
      gcacaaata ataagggaa atttataga catagcggt 
      attaaagga ctgtatgcc ggtttagtt cctcgactt 
      gttaaagtt gccccagcg tgtgctatt atgatatcg 
      tcatttgaa tatggaaag gtatttttc tacagatat 
      aacgaattt atgtataat catggtgcg agtctacaa 
      gaagttacc gatttttac gccgaagaa tatttccca 
      cctgaacat aattaa
    • >TC000750 RB
      atgtcatta gaggatccg ctatatcac ataactcca 
      gtgcaacaa gcggccgct tcatgtacg ggggctgtt 
      ctaacctca cttttagtc actccatta gacgtagtc 
      aaaattaga ttacaagct cagcatcgc ttatctcaa 
      aatgtgtcc aataaatgt tttttatac tgtaatggg 
      cttatggac catttttgt ggttgtact ccaaacaat 
      gggcagaag cattggttt caaagacct gggcacttt 
      aacggaact atagacgct tttattaaa attacgaaa 
      aatgaagga atttattca ttgtggagc ggtttagga 
      cctactcta gttctagca cttccgacc acaattttg 
      tattttgtg acttatgaa cagttaaga ttaagattg 
      aagaatttg tacaataga aacaacgtg gagggacaa 
      gagaggaaa cagccttat tggattcca ttaatctca 
      ggtgcaact gccagaata tttgctgtt tctgttgta 
      agtccttta gaattgatt agaactaaa atgcaatcg 
      cggaaaata tcgtacgca gaaataaac gaatcttta 
      aaattgttg attaagcaa gacgggatc aagggatta 
      tggaagggt gtttttcca actttggga agggatgtt 
      cccttctct gccatttac tggatgaat tacgagacc 
      atcaaaggt ttttttggg tcagacact ccaactttt 
      ggcgttagt tttttcgct ggggctgtg tcaggaggg 
      attgctgct tttgccaca gttccgttt gatgtcgtt 
      aaaacccac caacagatc gaaattggt gaaaaaact 
      ctttatacc gataaacca caaagaaca aaacgtaca 
      gcacaaata ataagggaa atttataga catagcggt 
      attaaagga ctgtatgcc ggtttagtt cctcgactt 
      gttaaagtt gccccagcg tgtgctatt atgatatcg 
      tcatttgaa tatggaaag gtatttttc tacaggtta 
      gccaatcca gattcagat atctttaat tccagcaaa 
      gaaaactta caatcaaat aaataa
    mRNA sequence
    • >TC000750 RA
      tgtcaaccc tgaactgtc agtagtgtg attcccttt 
      tgttactta tcacaaaat ttgggtttt tcgttgaaa 
      attttaaat gataacaat aagcgacag tctgtaatt 
      gattagaga ccaaaaatg tcattagag gatccgcta 
      tatcacata actccagtg caacaagcg gccgcttca 
      tgtacgggg gctgttcta acctcactt ttagtcact 
      ccattagac gtagtcaaa attagatta caagctcag 
      catcgctta tctcaaaat gtgtccaat aaatgtttt 
      ttatactgt aatgggctt atggaccat ttttgtggt 
      tgtactcca aacaatggg cagaagcat tggtttcaa 
      agacctggg cactttaac ggaactata gacgctttt 
      attaaaatt acgaaaaat gaaggaatt tattcattg 
      tggagcggt ttaggacct actctagtt ctagcactt 
      ccgaccaca attttgtat tttgtgact tatgaacag 
      ttaagatta agattgaag aatttgtac aatagaaac 
      aacgtggag ggacaagag aggaaacag ccttattgg 
      attccatta atctcaggt gcaactgcc agaatattt 
      gctgtttct gttgtaagt cctttagaa ttgattaga 
      actaaaatg caatcgcgg aaaatatcg tacgcagaa 
      ataaacgaa tctttaaaa ttgttgatt aagcaagac 
      gggatcaag ggattatgg aagggtgtt tttccaact 
      ttgggaagg gatgttccc ttctctgcc atttactgg 
      atgaattac gagaccatc aaaggtttt tttgggtca 
      gacactcca acttttggc gttagtttt ttcgctggg 
      gctgtgtca ggagggatt gctgctttt gccacagtt 
      ccgtttgat gtcgttaaa acccaccaa cagatcgaa 
      attggtgaa aaaactctt tataccgat aaaccacaa 
      agaacaaaa cgtacagca caaataata agggaaatt 
      tatagacat agcggtatt aaaggactg tatgccggt 
      ttagttcct cgacttgtt aaagttgcc ccagcgtgt 
      gctattatg atatcgtca tttgaatat ggaaaggta 
      tttttctac agatataac gaatttatg tataatcat 
      ggtgcgagt ctacaagaa gttaccgat ttttacgcc 
      gaagaatat ttcccacct gaacataat taatttgta 
      ttatgtact tttagaaat aaatattaa gttgtagtc 
      aaaaaattg acataaacc gccacaaat aaattgtta 
      ttgtttta
    • >TC000750 RB
      tgtcaaccc tgaactgtc agtagtgtg attcccttt 
      tgttactta tcacaaaat ttgggtttt tcgttgaaa 
      attttaaat gataacaat aagcgacag tctgtaatt 
      gattagaga ccaaaaatg tcattagag gatccgcta 
      tatcacata actccagtg caacaagcg gccgcttca 
      tgtacgggg gctgttcta acctcactt ttagtcact 
      ccattagac gtagtcaaa attagatta caagctcag 
      catcgctta tctcaaaat gtgtccaat aaatgtttt 
      ttatactgt aatgggctt atggaccat ttttgtggt 
      tgtactcca aacaatggg cagaagcat tggtttcaa 
      agacctggg cactttaac ggaactata gacgctttt 
      attaaaatt acgaaaaat gaaggaatt tattcattg 
      tggagcggt ttaggacct actctagtt ctagcactt 
      ccgaccaca attttgtat tttgtgact tatgaacag 
      ttaagatta agattgaag aatttgtac aatagaaac 
      aacgtggag ggacaagag aggaaacag ccttattgg 
      attccatta atctcaggt gcaactgcc agaatattt 
      gctgtttct gttgtaagt cctttagaa ttgattaga 
      actaaaatg caatcgcgg aaaatatcg tacgcagaa 
      ataaacgaa tctttaaaa ttgttgatt aagcaagac 
      gggatcaag ggattatgg aagggtgtt tttccaact 
      ttgggaagg gatgttccc ttctctgcc atttactgg 
      atgaattac gagaccatc aaaggtttt tttgggtca 
      gacactcca acttttggc gttagtttt ttcgctggg 
      gctgtgtca ggagggatt gctgctttt gccacagtt 
      ccgtttgat gtcgttaaa acccaccaa cagatcgaa 
      attggtgaa aaaactctt tataccgat aaaccacaa 
      agaacaaaa cgtacagca caaataata agggaaatt 
      tatagacat agcggtatt aaaggactg tatgccggt 
      ttagttcct cgacttgtt aaagttgcc ccagcgtgt 
      gctattatg atatcgtca tttgaatat ggaaaggta 
      tttttctac aggttagcc aatccagat tcagatatc 
      tttaattcc agcaaagaa aacttacaa tcaaataaa 
      taattgtag atttaaggg cagctgaaa gcgattatt 
      gcggtttta tttctaaaa gtttttaat tgtgttaat 
      acggtgcga cctcgataa tacgaactc cgaaagaga 
      gaaatattg cttattgaa ctaaatgtt tatttgtaa 
      taaatctac gtttttttt taaagtctt caaaattgg 
      tttgataaa gaaatactt ttggttggg aaaccaatg 
      aaatcagac tttctcggc ttcgttttg tgtttgacg 
      tttttcgtt tgttttaat aacgtccga acagttttt 
      agtaaaatt atctttatt tattgtctt tatcatatt 
      tgagaagaa aagtggaga aatgatgtc actgctctt 
      gtgactaca atcgaagga aaaacttta cctataagg 
      ctcgaaaag acaaaaata aatattatt ggttttcgg 
      gctatttga gcatttcgc gagaaaagt gctcttatt 
      taacaaaat tagcttgaa attaatttt taagaagac 
      taaaataat ttttgagga
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY