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Gene information
General information
TC000269 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

scaffold_seqid8: 3718..43152
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC000269
    iBeetle screen iB_03002
    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 30.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 1 (3 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 2 (9 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC000269 RA
      MALVYSRSS GNITSSGYV GMKGPQAGC FVDKRSGWK 
      PEAAVAPTS SQSDAIGSS RRAFVRGAC CRGSRRRSR 
      VLSHGHVLR VGSVANIFP QELIRVPTV ENRGPVTLE 
      PSCPKRKKN DIRNDVDKE PKDLTNRTM FPTAQIKMR 
      LMSPSSSPA TSPTMSNSS SPTPPAVNY NKITGIPCV 
      AAASRYTAP VHIDVGGTI YTSSLETLT KYPESRLAK 
      LFNGSIPIV LDSLKQHYF IDRDGGMFR HILNFMRNS 
      RLLIPDNFT DLDLLLEEA RYFDIGPMI RQLEQLKKE 
      RIKNNGALS VPHNSLKSG GGFGRPHGA SSENSRQLG 
      QELYECVAL HVSPDLGER IMLSGDRSL LDEVFPETN 
      QAVMDARSG VAWNQQDVH HVIRFPLNG YCKLNSVQV 
      ITRLLNAGF KLAASNGGG VEGQQFSEY LFIRKILPG
    CDS sequence
    • >TC000269 RA
      atggcgctg gtgtactct aggagttcg ggaaatatc 
      acctcctcg ggatatgtc ggaatgaaa gggccccag 
      gctgggtgc ttcgtggat aaacgctcc ggttggaag 
      cctgaggcg gccgtcgct ccgaccagc agtcagtca 
      gacgcgatc ggcagttcg aggagggcc ttcgtgaga 
      ggtgcatgt tgtcgagga agccggcga agatcgcgt 
      gtgttaagt cacggtcac gtgctgagg gtgggaagc 
      gtcgccaac attttcccc caggagttg atacgcgtc 
      cccaccgtg gagaatcgc ggacccgtc acactggag 
      ccctcgtgc cccaagcga aaaaagaac gacattcga 
      aatgacgtg gacaaggaa ccaaaagac ttgaccaac 
      agaacaatg tttcctacg gctcagatt aaaatgagg 
      ctgatgtcg cctagcagt tcccccgcc acctccccg 
      acgatgtcg aactcctca tcgccgacc cctccagcc 
      gtgaactac aacaaaatc acgggaatt ccgtgcgta 
      gccgccgcc tcccggtac accgccccc gtgcatatc 
      gacgtcggc ggcaccatc tacacctca tcgctcgag 
      acactcacc aaatatccg gaatccaga ctggccaag 
      ctgttcaat ggaagcata cccatagta ctcgactcg 
      ctcaaacaa cactatttc attgaccga gacggaggc 
      atgttcagg catattttg aacttcatg aggaactca 
      agactgctt ataccagac aatttcacc gatctggac 
      ctgcttcta gaggaagca cgatacttc gacattgga 
      ccgatgatc cgacagttg gagcagctg aaaaaagag 
      cgaataaaa aacaacggc gccctgtcc gtcccccac 
      aactcgttg aaatccggg ggcggtttc gggcgcccc 
      cacggcgcc agttccgag aactcgcgg cagctgggc 
      caggagctg tacgaatgc gtggcgctg cacgtgagc 
      cccgacctg ggggagcgc atcatgctc tccggcgac 
      cgctcgctc ctcgacgag gtgttccct gaaacgaac 
      caggccgtg atggacgcc cgctccggc gtggcctgg 
      aaccagcag gacgtccac cacgtgatc cgcttcccg 
      ctcaacggc tactgcaag ctgaactca gtgcaggtg 
      ataacgagg ctgctgaac gccggcttc aagctggcg 
      gcgagcaac ggcggcggc gtcgaaggc cagcagttc 
      tccgagtac ctgttcata aggaagatc ctgccgggt 
      tga
    mRNA sequence
    • >TC000269 RA
      aaagtagct acattattt tgtcatgag agggccgaa 
      atggcgctg gtgtactct aggagttcg ggaaatatc 
      acctcctcg ggatatgtc ggaatgaaa gggccccag 
      gctgggtgc ttcgtggat aaacgctcc ggttggaag 
      cctgaggcg gccgtcgct ccgaccagc agtcagtca 
      gacgcgatc ggcagttcg aggagggcc ttcgtgaga 
      ggtgcatgt tgtcgagga agccggcga agatcgcgt 
      gtgttaagt cacggtcac gtgctgagg gtgggaagc 
      gtcgccaac attttcccc caggagttg atacgcgtc 
      cccaccgtg gagaatcgc ggacccgtc acactggag 
      ccctcgtgc cccaagcga aaaaagaac gacattcga 
      aatgacgtg gacaaggaa ccaaaagac ttgaccaac 
      agaacaatg tttcctacg gctcagatt aaaatgagg 
      ctgatgtcg cctagcagt tcccccgcc acctccccg 
      acgatgtcg aactcctca tcgccgacc cctccagcc 
      gtgaactac aacaaaatc acgggaatt ccgtgcgta 
      gccgccgcc tcccggtac accgccccc gtgcatatc 
      gacgtcggc ggcaccatc tacacctca tcgctcgag 
      acactcacc aaatatccg gaatccaga ctggccaag 
      ctgttcaat ggaagcata cccatagta ctcgactcg 
      ctcaaacaa cactatttc attgaccga gacggaggc 
      atgttcagg catattttg aacttcatg aggaactca 
      agactgctt ataccagac aatttcacc gatctggac 
      ctgcttcta gaggaagca cgatacttc gacattgga 
      ccgatgatc cgacagttg gagcagctg aaaaaagag 
      cgaataaaa aacaacggc gccctgtcc gtcccccac 
      aactcgttg aaatccggg ggcggtttc gggcgcccc 
      cacggcgcc agttccgag aactcgcgg cagctgggc 
      caggagctg tacgaatgc gtggcgctg cacgtgagc 
      cccgacctg ggggagcgc atcatgctc tccggcgac 
      cgctcgctc ctcgacgag gtgttccct gaaacgaac 
      caggccgtg atggacgcc cgctccggc gtggcctgg 
      aaccagcag gacgtccac cacgtgatc cgcttcccg 
      ctcaacggc tactgcaag ctgaactca gtgcaggtg 
      ataacgagg ctgctgaac gccggcttc aagctggcg 
      gcgagcaac ggcggcggc gtcgaaggc cagcagttc 
      tccgagtac ctgttcata aggaagatc ctgccgggt 
      tgaccggac tcggtccgg caaatcgac aatcagcgt 
      tcgtgacgc aactattca ttaatttat gttctcgtt 
      agttgtaat ttatcatcc tattgtcaa gacatgcct 
      tactttagt ttggagaat gatctaatt gttaatacg 
      tttgtttgc tagtggtta agtttaata ctatgtaaa 
      taattatat taatattgt attttttct tgttcatgg 
      gttgagcat tttttcgct gatctcatt agatctatt 
      cggctgtga tccgtttaa gaaaacagt gacgactgg 
      atgctgcgg cagctggcg gatcgacca ttatatact 
      gttgtaaag tgtgctact tcacaataa atattaact 
      attaac