Status
Please wait ...
Gene information
General information
TC001767 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007416.3: 7780562..7784626
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC001767
    Gene ontology

    GO terms for Tribolium

    • {{ goTerm.term }}
      ({{ goTerm.evidence }}){{ goTerm.evidenceTooltip }}
      {{goTerm.showAll ? '[-]' : '[+]'}}
      Status: {{ goTerm.status }}
      Evidence: {{ goTerm.evidence }} ({{ goTerm.evidenceTooltip }})
      Reference: {{ goTerm.referenceText }}
      Quotation: {{ goTerm.quotation }}
      Submitter: {{ goTerm.name }}

    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes


    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
    {{ goGene }}
    The Tribolium gene the GO term is assigned to.
    GO ID *
    {{ blurIdResult }}
    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
    {{ blurEvidenceResult }}
    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
    {{ blurReferenceResult }}
    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
    You may enter your name. The contact information can help us to clarify any questions. If you agree, we may show your name on this page to honor your contribution.
    Email
    We will use your email address only for possible questions regarding this annotation. We will never show your address or give it away.
    Publish name
    If you have entered your name and agree by marking the checkbox. we might show your name on this page to honor your contribution.
      {{ unavailableText }}

    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_02958

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 20.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: -1.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: -1.0% (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC001767 RA
      MQKAEKRLQ ALIQKYSGF NKHDYVKLD VTKKIFKKS 
      IFLCPKTAL FLLVPCLLI ATQMNLLNS SSCLIDMPS 
      DSSKWFREP ESCDICEGV TEVPKIKNI SPSDFYPNF 
      VTPAKPVVV TDGATSWPA SQKFSFEFF KNLYSNSDS 
      NFCQFFPYK TEFTSLEEV LQMDPRRAS LEPGQKPWY 
      IGWSNCNDN AGKILREFY NTPYFLPNT SENIALNWI 
      FMGGPGQGA HMHVDNVQF PSWQAQIKG RKLWRLAPP 
      PECLYKCQE MQVIVESGE IIVVDTNRW YHQTFILPG 
      EISITIGAE FD
    CDS sequence
    • >TC001767 RA
      atgcagaaa gccgagaaa cgcctccag gcccttatt 
      caaaaatac tccggtttt aacaaacac gactatgtc 
      aaactcgat gtgacaaaa aaaattttc aaaaaatcg 
      atttttttg tgcccaaaa accgccctt ttcctcctt 
      gtcccgtgt ctcctaatc gccactcag atgaattta 
      ctcaactca tcttcgtgt ttgatcgac atgccgtct 
      gactcatcg aaatggttc cgcgagccg gaatcttgc 
      gacatttgc gaaggagtg accgaggtc cccaaaatc 
      aaaaacatc tctccttcg gacttctac ccaaacttt 
      gtaacacct gcaaaacct gtcgttgtg accgatggc 
      gccaccagc tggcccgca tcccaaaaa ttctccttt 
      gaatttttc aaaaaccta tactcgaat tcggactca 
      aacttctgc cagtttttc ccctacaag accgagttc 
      acctccctg gaagaggtg ctgcaaatg gacccgcga 
      cgggccagc ctggagccc ggccaaaaa ccctggtat 
      ataggctgg agcaactgc aacgacaac gcggggaaa 
      atcctgcgc gagttttac aacaccccg tattttctg 
      cccaacacg tcggaaaac atcgccctg aactggatt 
      tttatgggg gggcccggc cagggggcc cacatgcac 
      gtcgataac gtgcaattc ccgtcgtgg caagcacaa 
      atcaagggg aggaaattg tggcggctg gcgccaccc 
      cccgaatgt ttgtacaaa tgccaggaa atgcaagtt 
      attgtggag tcgggtgaa atcatcgtc gtggatacg 
      aatcgttgg tatcaccaa actttcata ctgccaggc 
      gagataagt attacaatc ggggccgaa tttgattaa
    mRNA sequence
    • >TC001767 RA
      atggtgaac cgttatgca gaaagccga gaaacgcct 
      ccaggccct tattcaaaa atactccgg ttttaacaa 
      acacgacta tgtcaaact cgatgtgac aaaaaaaat 
      tttcaaaaa atcgatttt tttgtgccc aaaaaccgc 
      ccttttcct ccttgtccc gtgtctcct aatcgccac 
      tcagatgaa tttactcaa ctcatcttc gtgtttgat 
      cgacatgcc gtctgactc atcgaaatg gttccgcga 
      gccggaatc ttgcgacat ttgcgaagg agtgaccga 
      ggtccccaa aatcaaaaa catctctcc ttcggactt 
      ctacccaaa ctttgtaac acctgcaaa acctgtcgt 
      tgtgaccga tggcgccac cagctggcc cgcatccca 
      aaaattctc ctttgaatt tttcaaaaa cctatactc 
      gaattcgga ctcaaactt ctgccagtt tttccccta 
      caagaccga gttcacctc cctggaaga ggtgctgca 
      aatggaccc gcgacgggc cagcctgga gcccggcca 
      aaaaccctg gtatatagg ctggagcaa ctgcaacga 
      caacgcggg gaaaatcct gcgcgagtt ttacaacac 
      cccgtattt tctgcccaa cacgtcgga aaacatcgc 
      cctgaactg gatttttat gggggggcc cggccaggg 
      ggcccacat gcacgtcga taacgtgca attcccgtc 
      gtggcaagc acaaatcaa ggggaggaa attgtggcg 
      gctggcgcc accccccga atgtttgta caaatgcca 
      ggaaatgca agttattgt ggagtcggg tgaaatcat 
      cgtcgtgga tacgaatcg ttggtatca ccaaacttt 
      catactgcc aggcgagat aagtattac aatcggggc 
      cgaatttga ttaaagtac tccaaatgc ttaataaag 
      tcactgcag caagtaatg tgtgtttcc ttacgattc 
      cttatcact gataacaag ctcaaaaca actcggatc 
      gaacaaaac ggaagtaaa ctcaaattc tcatcgtta 
      accttacag gaaattaac aatagtgca tacgaaaaa 
      tttattaat gatgtgaat caagtaaaa atttgaata 
      caatataat tagtaataa tttatggcg ccgtgcagt 
      ggcgtggcc acaatttga gtttactgt gctctaatt 
      aattaatct taatcttat cgaaatttg ccgtaaatg 
      ccgcaacaa caacagatt gttaaaaga ttagtcaat 
      cgattgact aagttctaa ttaaggcaa ttcactaaa 
      ataaaattc gcatttgca ataaataat gccaattga 
      ttgtaaatt tcttgccgt gattattgt ccaaatggc 
      agggaatgc aaaaataac agacagaaa agcgtcata 
      actgagttg tttggggtt cggcggcgc tgagtaata 
      gaattcgct cgttccatt ctccacttt gtacacttc 
      tccagtcgg ttttgtgtc tgcatggtg ggtttgtcg 
      cgtatcaca aaatggctt ctccgtgtg cggattttg 
      ccaaactga cccctgacg agcaggagg aaattaagg 
      aaaaattcc acgaggtgt gtatcccta tcaa
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY