General information | |||
TC034409
Former TC numbers If one gene is splitted or genes are merged, the original TC numbers are listed. One listed former TC number indicates the previous gene has be splitted, serveral former TC number represents a merged gene. |
Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007424.3: 12252564..12257002 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC034409 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_02927 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 0.0% (includes death as pupa, adult)
larva segment partially not present - Penetrance (percentage of animals/eggs on slide): 30% - 50%
head not present - Penetrance (percentage of animals/eggs on slide): 30% - 50%
thorax not present - Penetrance (percentage of animals/eggs on slide): 30% - 50%
abdomen not present - Penetrance (percentage of animals/eggs on slide): 30% - 50%
affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): 30% - 50%
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 0.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 0.0% (includes death as larva, prepupa, pupa, adult)
- >TC034409 RA
MCRVAIFAC VLLLVSSED VLIRTTDSS LISASTELC GSDAEIELT KSGETSTMT VTLSPLEHN SVCKMRVKA PATHVVYVQ FVEPTPEVK RALKLNATT NHPPCVMSF FLPENPRVP VWKGDPCSE NALTEVDLL TPDFKIIWN PPANPAFTK GRKFVLTAV GQGAVCKEE GQHTCMRIG WDPMMCVAD NLLCNGFPN CPKSSTTSD EDEKLCKKS FFAPTSLEQ LAVELFKKW KPPELSNKW LHEKLDTAS PTPPQRKPF ISWREWQDV RKHESTTAA PEQTTPKKP PKATDSISQ VLSKYGPWG YLMLGMLIC GTVLMFCGL WECCFKKPK TEIEPPVTQ TQPTTVLII NQEEASPSP PNYDELDQP PSYTTLFPN FKVIQNPDD SGHSTNNCQ VQEDSTNSC NVQDNTNCN DESNMQSVD ET
- >TC034409 RA
atgtgcaga gtggctatt tttgcctgc gtgctttta ctagtcagt tcagaagac gtcctcata cggaccacc gattcttcg ttaatcagc gccagtaca gagctatgc ggctctgat gcagaaata gaattgacc aaatcaggg gagacatca acaatgaca gtcacgttg tcgcccctc gaacacaac agcgtatgc aaaatgcgc gtcaaggcc cccgcgacc cacgtggtc tacgtccag ttcgtggag cccaccccc gaggtgaaa cgcgccctc aaactcaac gccaccacc aaccacccc ccgtgcgtg atgagcttc tttctgccc gaaaacccg cgcgtgcca gtctggaag ggcgatccg tgctcggaa aacgccctc acagaagtg gatctgctc acccccgac ttcaaaatc atctggaac cctcccgca aaccccgcc ttcaccaag ggaaggaag ttcgtcctg acggcggtc ggccaaggc gccgtgtgc aaggaggag ggccagcac acctgcatg cggataggc tgggacccc atgatgtgc gtcgcggac aacctcctc tgcaacggc ttccccaac tgccccaag agctccaca acgagcgac gaggacgag aaactctgc aagaagagt ttcttcgcc ccgacgtcg ctcgagcaa ctggccgtg gagttgttc aaaaagtgg aagccgcca gagttgagc aacaaatgg ctgcatgag aagctagac accgcctcg ccgaccccg ccccagcgc aagcccttc atcagctgg agggagtgg caagacgtg cggaaacac gaaagcacg accgcggcc ccggaacag accacgccc aagaagccg cccaaagcc acagactcc atctcgcag gtcttgtcc aagtacgga ccgtggggg tatttgatg ctggggatg ctgatttgt gggacggtt ttgatgttt tgtggtttg tgggagtgt tgtttcaag aaaccaaag actgagatt gaaccgccg gtgactcag actcagccc actacagtg ctgatcatc aaccaggag gaggcgagt ccgagtccg cccaactac gacgagctg gaccagccg ccttcctac accactctc tttccgaat tttaaagtg attcagaac ccggacgat agtgggcat agcacgaac aattgccaa gtgcaggag gacagtacg aactcttgt aacgtgcaa gacaatacg aactgtaac gatgaaagt aatatgcaa agtgttgac gaaacctaa
- >TC034409 RA
actccccac gaaccggca atctagaat ttcaaagaa ccaatcctt aagcgctag tacaccgtt cggatgtgc ggccgagag tcgtgccgg tttttccgt gaaaaatgc ccagcgcat cagtgaaag tgtgcattt gatgcgacg aagaaggaa aaaattttt tgtgtacct gaggtgttc ctaaaaacc gaaaatgtg cagagtggc tatttttgc ctgcgtgct tttactagt cagttcaga agacgtcct catacggac caccgattc ttcgttaat cagcgccag tacagagct atgcggctc tgatgcaga aatagaatt gaccaaatc aggggagac atcaacaat gacagtcac gttgtcgcc cctcgaaca caacagcgt atgcaaaat gcgcgtcaa ggcccccgc gacccacgt ggtctacgt ccagttcgt ggagcccac ccccgaggt gaaacgcgc cctcaaact caacgccac caccaacca ccccccgtg cgtgatgag cttctttct gcccgaaaa cccgcgcgt gccagtctg gaagggcga tccgtgctc ggaaaacgc cctcacaga agtggatct gctcacccc cgacttcaa aatcatctg gaaccctcc cgcaaaccc cgccttcac caagggaag gaagttcgt cctgacggc ggtcggcca aggcgccgt gtgcaagga ggagggcca gcacacctg catgcggat aggctggga ccccatgat gtgcgtcgc ggacaacct cctctgcaa cggcttccc caactgccc caagagctc cacaacgag cgacgagga cgagaaact ctgcaagaa gagtttctt cgccccgac gtcgctcga gcaactggc cgtggagtt gttcaaaaa gtggaagcc gccagagtt gagcaacaa atggctgca tgagaagct agacaccgc ctcgccgac cccgcccca gcgcaagcc cttcatcag ctggaggga gtggcaaga cgtgcggaa acacgaaag cacgaccgc ggccccgga acagaccac gcccaagaa gccgcccaa agccacaga ctccatctc gcaggtctt gtccaagta cggaccgtg ggggtattt gatgctggg gatgctgat ttgtgggac ggttttgat gttttgtgg tttgtggga gtgttgttt caagaaacc aaagactga gattgaacc gccggtgac tcagactca gcccactac agtgctgat catcaacca ggaggaggc gagtccgag tccgcccaa ctacgacga gctggacca gccgccttc ctacaccac tctctttcc gaattttaa agtgattca gaacccgga cgatagtgg gcatagcac gaacaattg ccaagtgca ggaggacag tacgaactc ttgtaacgt gcaagacaa tacgaactg taacgatga aagtaatat gcaaagtgt tgacgaaac ctaacgccc cgcaaagac tttaggaat ctatgtatt gtgataatt aattctcga ctgactgag ttattttta atgttaacg caactgaac cctttttta ataaacctt gtaaaaagt t
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
