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Gene information
General information
TC030680 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007424.3: 5716393..5717750
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC030680
    iBeetle screen iB_02912

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 60.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 3 (3 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection


    adult nutritional state bad (cachectic) - Number of animals showing the phenotype: 3 (11 dpi)
    Days post injection


    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 60.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 100.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 5 (11 dpi)
    Days post injection


    pupal molt delayed (still larva) - Number of animals showing the phenotype: 4 (11 dpi)
    Days post injection


    larva lethality late (L7) - Number of animals showing the phenotype: 1 (16 dpi)
    Days post injection


    pupal molt not fulfilled (died as prepupa) - Number of animals showing the phenotype: 3 (16 dpi)
    Days post injection



    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC030680 RA
      MTTLCVTTV IKSFLRPNS KLLSSKPTF IFSKNLQYR 
      GLSNSSRPK PKQKEAAKG IGPISWRNL AITGVLGGG 
      LLAFMYYLK KEKEDALMR ERKRMLGKA KIGGYFELV 
      DSEGKTRKS DDFLGQWML IYFGFTHCP DICPDELEK 
      MAAVINDLD STKDVPRVQ PIFISVDPQ RDSPAVVGK 
      YCAEFSPRL LGLTGTVEQ VARACKAYR VYFSAGPKD 
      KDSDYIVDH TIIMYLVDP DGQFVDYYG QNKSAIEIA 
      ASIKVNMLK YAQMNVKSW F
    CDS sequence
    • >TC030680 RA
      atgaccaca ctttgtgta actacagta attaagtcc 
      tttttaagg ccaaactcg aagctactt agttcaaaa 
      cccacgttt attttttcc aaaaacttg caataccgg 
      ggtttgagt aacagttcg cgccccaaa cccaagcaa 
      aaggaggcc gccaagggc ataggcccc atctcatgg 
      cgcaactta gcaataacg ggggttcta gggggcggt 
      ttacttgca tttatgtac taccttaag aaagagaaa 
      gaggatgca ttaatgagg gagaggaaa cgaatgctg 
      ggtaaggcc aaaattggg ggctacttc gaactagtg 
      gactctgag ggtaagacg cgcaaaagc gacgatttt 
      ctggggcag tggatgtta atctacttt ggtttcaca 
      cactgtcct gatatttgc cccgacgag ttggaaaaa 
      atggcggct gtaattaac gacttagat tccacaaag 
      gatgtgccg cgagtccaa ccgatattt atttcggtt 
      gacccccaa agagactct cctgccgtg gtcggcaag 
      tactgtgcg gagttcagc ccccgactt ttgggactc 
      acggggaca gtggaacag gtggcaagg gcgtgcaag 
      gcctaccgt gtttacttc agtgcgggc cccaaagac 
      aaagacagt gactatatt gtcgaccac acgattata 
      atgtatctg gtggaccct gacggccaa ttcgtggac 
      tactacggg cagaacaag agcgcaata gaaattgcg 
      gcctccatc aaagtgaat atgttaaaa tatgcacaa 
      atgaatgtt aaaagctgg ttctaa
    mRNA sequence
    • >TC030680 RA
      taactagaa tataaccta gaagttccg aaaaatcgg 
      atttaaacc cgaaaatac atgatttcc agcgaaaag 
      gtgaacaaa tccagacga ttgcatgaa aatctgttg 
      gtcctgagt ggttcatag gcggaaaca ttgatcggc 
      gaacttaac ctcaaacgt catgaccac actttgtgt 
      aactacagt aattaagtc ctttttaag gccaaactc 
      gaagctact tagttcaaa acccacgtt tattttttc 
      caaaaactt gcaataccg gggtttgag taacagttc 
      gcgccccaa acccaagca aaaggaggc cgccaaggg 
      cataggccc catctcatg gcgcaactt agcaataac 
      gggggttct agggggcgg tttacttgc atttatgta 
      ctaccttaa gaaagagaa agaggatgc attaatgag 
      ggagaggaa acgaatgct gggtaaggc caaaattgg 
      gggctactt cgaactagt ggactctga gggtaagac 
      gcgcaaaag cgacgattt tctggggca gtggatgtt 
      aatctactt tggtttcac acactgtcc tgatatttg 
      ccccgacga gttggaaaa aatggcggc tgtaattaa 
      cgacttaga ttccacaaa ggatgtgcc gcgagtcca 
      accgatatt tatttcggt tgaccccca aagagactc 
      tcctgccgt ggtcggcaa gtactgtgc ggagttcag 
      cccccgact tttgggact cacggggac agtggaaca 
      ggtggcaag ggcgtgcaa ggcctaccg tgtttactt 
      cagtgcggg ccccaaaga caaagacag tgactatat 
      tgtcgacca cacgattat aatgtatct ggtggaccc 
      tgacggcca attcgtgga ctactacgg gcagaacaa 
      gagcgcaat agaaattgc ggcctccat caaagtgaa 
      tatgttaaa atatgcaca aatgaatgt taaaagctg 
      gttctaatg tcaccttat agaggattt cctctgaac 
      ttgtattac gatttttag cgcaaacaa attatagat 
      tta
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY